SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50206

Length: 457 nt

UniGene Fasta

>sp_v3.0_unigene50206
ATGATAGGGAACCTTCTGGAACAGCTCAAGATATCTGACCTCAAAGAGTGGCCAGAGACCAGGGAGCCATTGGAACAGTTTGAGGACGCCCTCAGAAGAGCCTATGGGCTTGTCAACAGTTGCCAGGATAAGAGCTATCTCTACTTGCTTGCACTTGGTTGGACTATTGTTTCTCAGTTCAGACACTCCCAGGCCGAGATTGATAGATACCTCAAGCTCATTCCTCTCATTCAGCTTGTTGATAACAAGAGAGTAAGAGAGAAGATGCAGGCAATAGAAAAGGACCAGAAAGAGTATACACTTGATGAAGAGGAGAATAGAGAGCGGGAGGTACTTTTAAAATCTGACTGCACTTTGACAGGCTCTATGGTGTTGAAGAAGTCTTTGTCTCGTAGGTATCCTGACATGGCCTTTGAAGAGGCTCTTCAAACAGAAAATGAGAAACTCCAAGAGGAGC

Ace file of the UniGene sp_v3.0_unigene50206

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PLAC8 domain-containing protein [Arabidopsis thaliana] ref\|NP_849503.1\| PLAC8 domain-containing protein [Arabidopsis thaliana] ref\|NP_849504.2\| PLAC8 domain-containing protein [Arabidopsis thaliana] sp\|Q8L7E9.1\|MCAC1_ARATH RecName: Full=Protein MID1-COMPL	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	Gene names
Sma3	AT4G35920; AT4g35920; At2g17780; GSVIVT00003869001; GSVIVT00029351001; LOC_Os03g06120; MCA1; MCA2; OSJNBa0011L14.7; Os03g0157300; OsI_10083; OsJ_20556; PHYPADRAFT_134079; PHYPADRAFT_17466; PHYPADRAFT_233853; PHYPADRAFT_4214; POPTRDRAFT_226936; POPTRDRAFT_

Source	GOs	Term	Type	Identity
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transposase activity	GO:0004803	Molecular Function	-
Sma3	transposition, DNA-mediated	GO:0006313	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-
Sma3	mechanosensory behavior	GO:0007638	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Transposase, IS4-like	IPR002559	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G35920.1	MCA1 PLAC8 family protein chr4:17012106-17014192 REVERSE LENGTH=421	65%
RefSeq	Arabidopsis thaliana	NP_849504.2	PLAC8 domain-containing protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002327738.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9N6

Fln msg: Distance to subject end: 81 aas, atg_distance in limit (1-15): atg_distance = 15, your sequence is shorter than subject: 152 - 247

Fln protein: MIGNLLEQLKISDLKEWPETREPLEQFEDALRRAYGLVNSCQDKSYLYLLALGWTIVSQFRHSQAEIDRYLKLIPLIQLVDNKRVREKMQAIEKDQKEYTLDEEENREREVLLKSDCTLTGSMVLKKSLSRRYPDMAFEEALQTENEKLQEE

Protein Length: 153

Fln nts: _-_ATGATAGGGAACCTTCTGGAACAGCTCAAGATATCTGACCTCAAAGAGTGGCCAGAGACCAGGGAGCCATTGGAACAGTTTGAGGACGCCCTCAGAAGAGCCTATGGGCTTGTCAACAGTTGCCAGGATAAGAGCTATCTCTACTTGCTTGCACTTGGTTGGACTATTGTTTCTCAGTTCAGACACTCCCAGGCCGAGATTGATAGATACCTCAAGCTCATTCCTCTCATTCAGCTTGTTGATAACAAGAGAGTAAGAGAGAAGATGCAGGCAATAGAAAAGGACCAGAAAGAGTATACACTTGATGAAGAGGAGAATAGAGAGCGGGAGGTACTTTTAAAATCTGACTGCACTTTGACAGGCTCTATGGTGTTGAAGAAGTCTTTGTCTCGTAGGTATCCTGACATGGCCTTTGAAGAGGCTCTTCAAACAGAAAATGAGAAACTCCAAGAGGAGC

Fln Alignment:

CL10131Contig1___MIGNLLEQLKISDLKEWPETREPLEQFEDALRRAYGLVNSCQDKSYLYLLALGWTIVSQFRHSQAEIDRYLKLIPLIQLVDNKRVREKMQAIEKDQKEYTLDEEENREREVLLKSDCTLTGSMVLKKSLSRRYPDMAFEEALQTENEKLQEE
D5A9N6_______________MIGNLLEQLKVSELKEWPETREPLEQFEDALRRAYGLVNSCQDRSYLYLLALGWTIVSQFRHSQAEIDRYLKLIPLIQLVDNKRVREKLQAIEKDQQEYTLDDEEKRDRETLLKSDCTLADSMVLRKSLSRRYPDMAFEEALQTESDKLQKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain