SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50195

Length: 434 nt

UniGene Fasta

>sp_v3.0_unigene50195
ATACTGTTCAACAGAAAGAGCTCGCAGTTTATTTTACTCATAGCAACCTTCAAAAATTCCATTTGAGGTTGGCTTTGCTGAATACCATGGGTGTTTGTTATAAAGGAGGGAGCTTCAGTACAGCAGCTAACTTTGCTTGATGATTTGGAAAGTGAACCCCTGCAAACCATTCAACAAAGGTACAAGTTCTGCAGGCATGCGAGAATCAGCTGCAGGATGCCAAAAAACTGAATTATGGCTTTGACTTCAGAAAGCCTTTTGATGGTGGTGCAGCAACTTTTACACCTATATACCATGGTCAGTCAGAAGGATGTGTCCTGTCCATATTGTACAGCATGCTTTGTTCCAGTCGTACAAGGAAATCTCTGCCCTATATGTGAGCTTGCCATTGTGGGTTCCAATGCTTCTGGGTGCTGAATGTGCATCTTTATTTC

Ace file of the UniGene sp_v3.0_unigene50195

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Coatomer alpha subunit-like protein n=2 Tax=Lotus japonicus RepID=Q70I39_LOTJA	-	-	1.0e-24	45%
FL-Next	sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Sma3	Coatomer alpha subunit, putative	-	-	4.17e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	[Myosin heavy-chain] kinase.	EC:2.7.11.7	-	2.199e-06	-

Source	Gene names
Sma3	615K1.1; At1g62020; CM0216.440.nc; F8K4.21; GSVIVT00004883001; GSVIVT00014508001; POPTRDRAFT_570035; POPTRDRAFT_575095; RCOM_1215590; RCOM_1449180;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	COPI vesicle coat	GO:0030126	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G62020.1	Coatomer, alpha subunit chr1:22919814-22923728 FORWARD LENGTH=1216	4.0e-30	51%
RefSeq	Arabidopsis thaliana	NP_176393.1	coatomer subunit alpha-1 [Arabidopsis thaliana]	5.0e-30	51%
RefSeq	Populus trichocarpa	XP_002321558.1	predicted protein [Populus trichocarpa]	1.0e-26	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q94A40

Fln msg: Overlapping hits, possible frame ERROR between 308 and 304, your sequence is shorter than subject: 139 - 1216

Fln protein: TVQQKELAVYFTHSNLQKFHLRLALLNTMGVCYKGGSFSTAANFA**FGK*TPANHSTKVQVLQACENQLQDAKKLNYGFDFRKPFDGGAATFTPIYHGQxxxDVSCPYCTACFVPVVQGNLCPICELAIVGSNASGC*

Protein Length: 140

Fln nts: ATACTGTTCAACAGAAAGAGCTCGCAGTTTATTTTACTCATAGCAACCTTCAAAAATTCCATTTGAGGTTGGCTTTGCTGAATACCATGGGTGTTTGTTATAAAGGAGGGAGCTTCAGTACAGCAGCTAACTTTGCTTGATGATTTGGAAAGTGAACCCCTGCAAACCATTCAACAAAGGTACAAGTTCTGCAGGCATGCGAGAATCAGCTGCAGGATGCCAAAAAACTGAATTATGGCTTTGACTTCAGAAAGCCTTTTGATGGTGGTGCAGCAACTTTTACACCTATATACCATGGTCAGxxxxxxxxxGATGTGTCCTGTCCATATTGTACAGCATGCTTTGTTCCAGTCGTACAAGGAAATCTCTGCCCTATATGTGAGCTTGCCATTGTGGGTTCCAATGCTTCTGGGTGCTGAATGTGCATCTTTATTTC

Fln Alignment:

CL9869Contig1___VQQKELAVYFTHSNLQKFHLRLALLNTMGVCYKXXXXXXXXXXXXXXXK*TPANHSTKV--QVLQACENQLQDAKKLNYGFDFRKPFDGGAATFTPIYHGxxxVSCPYCTACFVPVVQGNLCPICELAIVGSNASG
Q94A40_______________VRQQELAAYFTHCNLQTPHLRLALLSAMGVCYKAKNLATASNFARRLLETSPVDSQAKMARQVVQAAERNMTDETKLNY--DFRNPFVVCGSTYVPIYRGxxxVSCPYCTARFVPNQEGNICTVCDLAVIGADASG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain