SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50172

Length: 382 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene50172
AGGTGTTGCATATGGTCATACTACTTTGAGAGTTTCAGACACTGTAAACAAATGTTTGGGACCTTTAGAGGCAGAAACCAAAGACGATGACCGCCCTCTAATTGTTGCAGATGGGACATCCGCCCTCGTTGTTGGAGCAGAAAATGCGGTGCACTATCCTAATCCACCAAACCCATCGAAGGTTTTGTACATAAACAGGAAAGAGGCTCCTCTTTTGAGGGTTGAAAGGGGTGTACAAGTGAAATTCTCAATACAGGCTGGGCATGATGTTGCATTTTGTATTACTTCGGATCCTATTGGTGGGGCTGCATACAGAAATGAAACTCAAACTATCTACATGGGTGGAGAAGACACCCATGGGGTGCCTGCAAATCCTTTGGAG

Ace file of the UniGene sp_v3.0_unigene50172 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DOMON and dopamine beta-monooxygenase N-terminal domain-containing protein [Arabidopsis thaliana] dbj\|BAB08762.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL90897.1\| AT5g54830/MBG8_9 [Arabidopsis thaliana] gb\|AAO11544.1\| At5g54830/MBG8_9 [Arabid	-	-	5.0e-38	63%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	66%

Source	Gene names
Sma3	At5g54830; GSVIVT00032699001; Os06g0649700; Os09g0557700; OsI_23918; OsI_32359; OsJ_22172; OsJ_30308; P0453H04.12; PHYPADRAFT_136386; POPTRDRAFT_561973; POPTRDRAFT_779106; VITISV_031502;

Source	GOs	Term	Type	Identity
Sma3	dopamine beta-monooxygenase activity	GO:0004500	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	histidine catabolic process	GO:0006548	Biological Process	-
Sma3	carbohydrate catabolic process	GO:0016052	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DOMON domain	IPR005018	-	-
Sma3	Cytochrome b561/ferric reductase transmembrane	IPR006593	-	-
Sma3		IPR013050	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G54830.1	DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein chr5:22273394-22276117 FORWARD LENGTH=907	1.4013e-45	63%
RefSeq	Arabidopsis thaliana	NP_200294.1	DOMON and dopamine beta-monooxygenase N-terminal domain-containing protein [Arabidopsis thaliana]	1.4013e-45	63%
RefSeq	Populus trichocarpa	XP_002324904.1	predicted protein [Populus trichocarpa]	0.0	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IL40

Fln msg: Distance to subject end: 428 aas, your sequence is shorter than subject: 127 - 900

Fln protein: GVAYGHTTLRVSDTVNKCLGPLEAETKDDDRPLIVADGTSALVVGAENAVHYPNPPNPSKVLYINRKEAPLLRVERGVQVKFSIQAGHDVAFCITSDPIGGAAYRNETQTIYMGGEDTHGVPANPLE

Protein Length: 128

Fln nts: AGGTGTTGCATATGGTCATACTACTTTGAGAGTTTCAGACACTGTAAACAAATGTTTGGGACCTTTAGAGGCAGAAACCAAAGACGATGACCGCCCTCTAATTGTTGCAGATGGGACATCCGCCCTCGTTGTTGGAGCAGAAAATGCGGTGCACTATCCTAATCCACCAAACCCATCGAAGGTTTTGTACATAAACAGGAAAGAGGCTCCTCTTTTGAGGGTTGAAAGGGGTGTACAAGTGAAATTCTCAATACAGGCTGGGCATGATGTTGCATTTTGTATTACTTCGGATCCTATTGGTGGGGCTGCATACAGAAATGAAACTCAAACTATCTACATGGGTGGAGAAGACACCCATGGGGTGCCTGCAAATCCTTTGGAG

Fln Alignment:

CL9625Contig1___VAYGHTTLRVSDTVNKCLGPLEAETKDDDRPLIVADGTSALVVGAENAVHYPNPPNPSKVLYINRKEAPLLRVERGVQVKFSIQAGHDVAFCITSDPIGG-AAYRNETQTIYMGGEDTHGVPANPLE
B9IL40_______________VTYGHLVLNVSDQVNECLGPLDAADKED-QDLIIADANKPLVVTTGPAVHYPNPPNPSKVLYINKKEAPVLKVERGVPVKFSVQAGHDVALYITSDLIGGNATLRNKTETIYAGGSEAEGVLASPME

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain