UniGene Name: sp_v3.0_unigene50114
Length: 175 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
UniGene Fasta (sense) |
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>sp_v3.0_unigene50114
T |
Ace file of the UniGene sp_v3.0_unigene50114 (antisense) |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | Cellulose synthase-like C3, glycosyltransferase family 2 n=2 Tax=Physcomitrella patens RepID=E1C9X6_PHYPA | - | - | 1.0e-08 | 93% |
FL-Next | sp=Probable xyloglucan glycosyltransferase 12; Arabidopsis thaliana (Mouse-ear cress). | - | - | 0.0 | 96% |
Sma3 | Cellulose synthase-like protein C4 | - | - | 2.901e-08 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Transferases, Glycosyltransferases, Hexosyltransferases. | EC:2.4.1.- | - | 4.422e-26 | - |
Source | Gene names |
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Sma3 | At2g24630; At3g07330; At3g28180; At4g07960; At4g31590; CSLC1; CSLC10; CSLC12; CSLC2; CSLC3; CSLC4; CSLC5; CSLC6; CSLC7; CSLC8; CSLC9; CslC1; CslC2; CslC3; F1K3.3; F21O3.4; F25P17.7; F28M20.220; GSVIVT00000743001; GSVIVT00008341001; GSVIVT00014999001; GSVI |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | Golgi membrane | GO:0000139 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | integral to membrane | GO:0016021 | Cellular Component | 0.0 | - |
Sma3 | transferase activity | GO:0016740 | Molecular Function | 0.0 | - |
Sma3 | transferase activity, transferring glycosyl groups | GO:0016757 | Molecular Function | 0.0 | - |
Sma3 | cellular cell wall organization | GO:0007047 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Glycosyl transferase, family 2 | IPR001173 | - | 0.0 | - |
Sma3 | Inorganic pyrophosphatase | IPR008162 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT4G07960.1 | ATCSLC12, CSLC12 Cellulose-synthase-like C12 chr4:4802628-4805114 REVERSE LENGTH=699 | 1.0e-12 | 96% |
RefSeq | Arabidopsis thaliana | NP_192536.1 | putative xyloglucan glycosyltransferase 12 [Arabidopsis thaliana] | 1.0e-12 | 96% |
RefSeq | Populus trichocarpa | XP_002320599.1 | predicted protein [Populus trichocarpa] | 9.0e-14 | 93% |
Full-Lengther Next Prediction |
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Fln status: C-terminus
Fln database: sp_plants
Fln subject: Q9ZQB9
Fln msg: your sequence is shorter than subject: 33 - 699
Fln protein:
L
Protein Length:
34
Fln nts:
T
Fln Alignment:
CL8977Contig1___LLSAQGIHFYFLLFEGISFLLVGLDLIGEQV
Q9ZQB9_______________LLSAQGIHFYFLLFQGISFLLVGLDLIGEQV
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain