SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50073

Length: 1487 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene50073 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MFS_1 domain containing protein	-	-	2.0e-22	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Major facilitator superfamily antiporter	-	-	1.735e-16	-

Source	Gene names
Sma3	AT5G13750; At3g43790; At5g13740; At5g13750; At5g13750/MXE10.2; GSVIVT00023334001; GSVIVT00033966001; GSVIVT00033971001; GSVIVT00033972001; GSVIVT00033973001; GSVIVT00033975001; LOC_Os11g04020; LOC_Os11g04030; LOC_Os11g04060; LOC_Os11g04104; LOC_Os11g04150

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	tetracycline:hydrogen antiporter activity	GO:0015520	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	tetracycline transport	GO:0015904	Biological Process	-
Sma3	response to antibiotic	GO:0046677	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tetracycline resistance protein, TetA/multidrug resistance protein MdtG	IPR001958	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13740.1	ZIF1 zinc induced facilitator 1 chr5:4432689-4436483 FORWARD LENGTH=486	56%
RefSeq	Arabidopsis thaliana	NP_196878.2	zinc induced facilitator 1 proetin [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002310957.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP10

Fln msg: your sequence is shorter than subject: 385 - 512

Fln protein: FWMAISMRFLLGSFNGLLGPVKAYASEVCRDEHQALGLSVVGTMWGIGLIIGPALGGFLVQPADKYPEIFPKNSFFGRFPYLLPCLCISVIAVVVLVTTFWLPETLHRHPLECEENGDDELEFGFGHNYSKEKDGQITEKKKAHKKSLFRKWPVMSSIIVYCVFSLHEVAYSEIFSLWAESPKTYGGLGYTTTNVGTVLSITGVGVLIFQLLIFPSIANFIGAILIIRIAAALTVPVLASYPFIPKLSGLLLWLVINCASLLKNVLSVTVYTGTFLLLNNSVSQDQRGAANGLAMTGMSLFKTFGPAGGGSIFAWSQRRQDASFLPGNHIVFFFLNVILFIVIAMTFEPFLPQSTNKPIQSKEQSYSKVDEEEPTVEQERHISS*

Protein Length: 386

Fln nts: ATTTTTGGATGGCTATTTCAATGAGATTTCTCCTTGGTAGCTTCAATGGCCTGCTTGGCCCAGTAAAGGCATATGCATCAGAAGTCTGCAGGGATGAACACCAAGCTCTGGGCCTATCAGTTGTGGGTACCATGTGGGGAATAGGTCTGATCATTGGTCCAGCTCTTGGAGGTTTCCTTGTGCAGCCAGCGGACAAATATCCAGAGATATTCCCCAAAAACTCTTTCTTTGGAAGATTTCCATATCTTTTACCATGTCTTTGCATCTCAGTCATTGCAGTTGTAGTTCTTGTGACTACATTCTGGCTTCCGGAGACACTCCACAGACACCCTTTGGAATGTGAGGAGAATGGAGATGATGAATTAGAGTTTGGTTTTGGACACAATTATAGCAAGGAAAAAGATGGACAAATCACGGAGAAGAAAAAAGCGCATAAAAAATCACTCTTCAGGAAATGGCCAGTAATGTCTTCAATCATTGTGTATTGTGTTTTTTCTCTTCATGAGGTTGCATATTCAGAGATATTTTCTCTTTGGGCTGAGAGTCCTAAAACATATGGAGGATTGGGTTATACCACCACTAATGTCGGTACAGTGCTTTCAATCACAGGTGTCGGGGTACTGATCTTCCAACTCCTCATCTTCCCATCCATAGCAAATTTTATTGGAGCTATTCTTATCATCCGCATAGCAGCAGCATTAACTGTACCAGTGTTGGCATCCTACCCATTTATACCTAAGCTATCAGGTCTTTTGCTTTGGTTGGTTATTAATTGTGCATCCTTGTTAAAAAATGTATTATCTGTGACAGTATACACGGGAACTTTCCTTCTCCTAAATAATTCTGTGTCCCAAGATCAAAGAGGGGCTGCAAACGGTCTTGCCATGACTGGAATGTCTCTTTTCAAAACATTTGGCCCAGCGGGAGGAGGTTCAATCTTTGCATGGTCACAAAGGCGTCAAGACGCATCATTCCTTCCAGGAAATCACATTGTTTTCTTTTTCTTAAATGTTATCCTCTTCATAGTAATTGCTATGACGTTTGAGCCATTCCTACCTCAATCAACTAATAAACCGATTCAATCAAAAGAACAAAGTTACTCAAAGGTTGATGAGGAAGAACCAACAGTTGAGCAAGAGCGACACATATCTTCATGA___TCTTTTATGTACTTTCCATGAAAAATAGAGGTCCACAGTGTTATATCGACGATGGTTCTCCATATACTGTGAAATGTGTTATAGTCTACACTGCCAATATGATATGAGAAGTTTGCAGTGACGGTGTAATGTAATTTCAATCTATTTGTATTGTGCTGTAAATGCACGACTCAATACCTGAGATTTTGTTGCTTTTATTTCTCGAAATAAAATTCTAGAAATCTTAATTCGATTGAGAGAAGAATGTGTAACGTGATTACATTTGATCGTAAAATCTAATTGTTCTACTACAGTGAAACCAAAGAACTATAATTTTTATTTATATCTTAG

Fln Alignment:

CL8463Contig1___FWMAISMRFLLGSFNGLLGPVKAYASEVCRDEHQALGLSVVGTMWXXXXXXXXXXXXXLVQPADKYPEIFPKNSFFGRFPYLLPCLCISVIAVVVLVTTFWLPETLHRHPLECEENGDDELEFGFGHNYSKEKDGQITEKKKAHKKSLFRKWPVMSSIIVYCVFSLHEVAYSEIFSLWAESPKTYGGLGYTTTNVGTVLSITGVGVLIFQLLIFPSXXXXXXXXXXXXXXXALTVPVLASYPFIPKLSGLLLWLVINCASLLKNVLSVTVYTGTFLLLNNSVSQDQRGAANGLAMTGMSLFKTFGPAGGGSIFAWSQRRQDASFLPGNHXXXXXXXXXXXXXIAMTFEPFLPQSTNKPIQSKEQSYSKVDEEEPTVEQERHISS
B8LP10_______________FWMAVSMRFLLGSFNGMLGPVKAYASEICRDEHQALGLSVVGTMWGIGLIIGPALGGFFAQPADKYPKIFPKNSLFGRFPYLLPCLCISVIALVVLVTTFWLPETLHRHPLECEEKGDDDLEFS-GPNSIKEKDGQIMEKQKVNRKSLFRNWPVMSSIIVYCVFSLHEVAYSEIFSLWAESPKAYGGLGFTTTNVGTVLSITGVGVLIFQLLIFPSIANFTGAILITRIAAVLSIPVLACYPFISMLSGGFLWLVINCASLLKNVLTVTVYTGTFLLLNNSASQDQRGAANGLAMTGMSLFKTFGPAGGGSIFAWAQRRQDASFLPGNQIVFFFLNAILLIVIAMTFEPFLPRSTNRLNQSKD---SKVDKQEPTIEQEQHLSS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain