SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50024

Length: 1224 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene50024

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Major facilitator protein n=3 Tax=Arabidopsis RepID=Q8H132_ARATH	-	-	0.0	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%

Source	Gene names
Sma3	At1g31470; At4g19450; POPTRDRAFT_799838; POPTRDRAFT_826673; RCOM_0866650; T8E3.15;

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	0.0	-
Sma3	response to salt stress	GO:0009651	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	0.0	-
Sma3	Nodulin-like	IPR010658	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Distance to subject end: 203 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 394 - 626

Fln protein: NVQLYIVEDAESSWNLSKEEIRKFIIISLHILQVLQIGQVQLNNLAVASDLGKALGWTAGYAMRRMPLWAVMLIASIIGLVGYGVQWLVITEKISAQYWQIYLLCLLAGNSICWLNTVGFILCIHYFPTRKAMALGISTSYNGLSAALYTLIVKAISLDNESLYLLLNAILPLIICSILFTFIRKLPSLEDSESESLRDGERFTFIILNVIAVVLGVYLLVNEFLNFKSTLSYRLYAIGMVLLLVAPLCIPGGIYIRDLRNNRDAAMGLQGDYPRISDDNSELAKHFLCSDEDRNLQENEMEFGDEVVPEGSAGEEDFADNNSDICNNIFTRIRSFWSHSQPSLGQEHNVPQLFSSVDFWLYFFMYFSGATLGLVYSNNLGQIAQSRGHSNATV

Protein Length: 395

Fln nts: ATCCTCTGTTCACCCCAATTGCACACATGGGTATCTACTAAA_-_ATGTCCAGCTTTATATTGTTGAAGATGCCGAGTCGAGCTGGAATCTCTCCAAAGAAGAAATCAGGAAATTCATCATCATAAGCCTCCATATATTACAAGTTTTGCAGATCGGTCAGGTCCAACTTAACAATCTTGCCGTGGCTTCGGATTTAGGAAAGGCGCTGGGATGGACAGCCGGATATGCAATGCGTCGTATGCCCCTGTGGGCAGTTATGCTCATAGCATCAATCATAGGACTCGTGGGTTATGGAGTCCAGTGGCTGGTTATAACAGAGAAGATATCAGCCCAGTATTGGCAGATTTATCTCCTCTGCCTGTTAGCTGGGAACAGTATTTGCTGGCTGAATACTGTTGGTTTTATTCTCTGCATTCACTACTTTCCAACAAGAAAAGCAATGGCTCTTGGAATATCGACGAGCTACAATGGATTGTCAGCAGCACTATACACTTTGATTGTGAAGGCCATTTCCCTGGATAACGAGTCCTTGTATCTGTTACTAAATGCCATACTTCCATTGATAATTTGCTCCATTTTATTCACTTTTATCCGAAAGTTGCCCTCCCTGGAGGATTCTGAAAGTGAATCTCTAAGAGATGGCGAGAGGTTTACATTCATTATCTTGAATGTTATTGCCGTTGTCTTAGGGGTTTATCTCCTGGTCAACGAGTTTTTGAATTTCAAGAGCACATTGTCCTATAGACTGTATGCAATAGGTATGGTGCTGCTGTTAGTTGCCCCTCTATGTATACCTGGAGGCATCTATATACGTGATCTGAGAAACAACAGGGATGCAGCCATGGGATTGCAGGGTGATTATCCAAGAATTTCAGATGATAATAGCGAGTTAGCTAAACATTTTCTCTGTAGTGATGAAGACAGAAATTTGCAGGAAAATGAAATGGAATTTGGGGATGAAGTAGTGCCTGAAGGTTCTGCTGGTGAAGAAGACTTTGCAGATAACAATTCAGACATTTGCAATAACATTTTCACAAGAATTCGGTCGTTTTGGTCTCATTCCCAGCCTAGCTTAGGCCAAGAGCATAATGTCCCTCAACTTTTCAGCAGCGTGGATTTCTGGTTATATTTCTTTATGTATTTTAGTGGGGCAACTCTTGGGCTTGTCTACAGCAATAATCTGGGGCAAATTGCACAGTCAAGAGGGCATTCCAATGCGACAGTGT

Fln Alignment:

CL7911Contig1___AVASDLGKALGWTAGYAMRRMPLWAVMLIASIIGLVGYGVQWLVITEKI-SAQYWQIYLLCLLAGNSICWLNTVGFILCIHYFPTRKAMALGISTSYNGLSAALYTLIVKAISLDNESXXXXXXXXXXXXXCSILFTFIRKLPXXXXXXXXXXXXXXXFTFIILNVIAVVLGVYLLVNEFLNFKSTLSYRLYAIGMVLLLVAPLCIPGGIYIRDLRNNRDAAM-----GLQGDYPRISDDNSELAKHFLCSDEDRNLQEN---EMEFGDEVV---PEGSAGEEDFADNNSDICNNIFTRIRSFWS---------HSQPSLGQEHNVPQLFSSVDFWLYFFMYFSGATLGLVYSNNLGQIAQSRG
B8LRH5_______________SVAKDVGKAFGLVAGFASDYLPAWLILLIGSLEGFLGYGAQWLVLSQRIRPLPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCSALFASSPSSFVLMLTLIPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTF---NVIAITVAVYLLAFDITGKHGIVLSRTFAGFLLVLLAAPLVVPLKLFIKE-KNSRGEQLIPSFWKWKSANTQFLDIEKQVREPLLTNVEEAKGAENPETSVQAKAESIATEPRPSQSESVATEPWPSQSESVTTEPRPSQSESVENQIVCNSKPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain