SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49913

Length: 478 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene49913
TGATTGGTATTTCTGCTATTCTACGTTTGATGCTTATACTTTATGGAGAGTGGCAGGACACCCACATGGAGGTTCATTACACTGACATTGATTACTTGGTCTTCTCTGATGCTGCATCTCTAATGGTTTCCAACAAGTCTCCATATGACAGATCTACATACAGATATTCTCCACTCTTAGCTCTCTTGCTGATACCCAATTCCTACCTGCATCACTGCTGGGGCAAGCTCCTCTTTTCCGCTGCAGATTTGCTTGTGGGTCATCTCATATACTATATCCTCAGGCTACGTGGTTTGCCAGGGAAACAGTGTACGTTTTGTGTGGCAGTATGGCTTTTCAATCCATTCACATTCACTATTGCTACCAGGGGAAATTGTGAACCTCTTGTGTGTGCCATGATTTTGTGGATTCTGATATGTCTAATGAGAGGTCATATTGTGGAGGCAGCAATATGGTATGGACTAGTTGTCCATTTCAG

Ace file of the UniGene sp_v3.0_unigene49913 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GPI mannosyltransferase 1 n=3 Tax=Arabidopsis RepID=PIGM_ARATH	-	-	0.0	71%
FL-Next	sp=GPI mannosyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%

Source	Gene names
Sma3	At5g22130; B1130H05.7; CHLREDRAFT_121145; GSVIVT00034476001; GTR14; LOC_Os03g46750; MtrDRAFT_AC134521g61v2; OSTLU_40166; Os03g0670200; OsI_12951; Ot01g02860; PHYPADRAFT_140814; PIGM; PNT1; POPTRDRAFT_639801; RCOM_1264560; T6G21.34;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	GPI anchor biosynthetic process	GO:0006506	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	plant-type cell wall biogenesis	GO:0009832	Biological Process	-
Sma3	cellulose biosynthetic process	GO:0030244	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ArgE/DapE/ACY1/CPG2/YscS, conserved site	IPR001261	-	0.0	-
Sma3	Mannosyltransferase, DXD	IPR007704	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G22130.2	-	63%
RefSeq	Arabidopsis thaliana	NP_680199.1	GPI mannosyltransferase 1 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002299189.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q500W7

Fln msg: Distance to subject end: 270 aas, your sequence is shorter than subject: 158 - 450

Fln protein: IGISAILRLMLILYGEWQDTHMEVHYTDIDYLVFSDAASLMVSNKSPYDRSTYRYSPLLALLLIPNSYLHHCWGKLLFSAADLLVGHLIYYILRLRGLPGKQCTFCVAVWLFNPFTFTIATRGNCEPLVCAMILWILICLMRGHIVEAAIWYGLVVHF

Protein Length: 159

Fln nts: TGATTGGTATTTCTGCTATTCTACGTTTGATGCTTATACTTTATGGAGAGTGGCAGGACACCCACATGGAGGTTCATTACACTGACATTGATTACTTGGTCTTCTCTGATGCTGCATCTCTAATGGTTTCCAACAAGTCTCCATATGACAGATCTACATACAGATATTCTCCACTCTTAGCTCTCTTGCTGATACCCAATTCCTACCTGCATCACTGCTGGGGCAAGCTCCTCTTTTCCGCTGCAGATTTGCTTGTGGGTCATCTCATATACTATATCCTCAGGCTACGTGGTTTGCCAGGGAAACAGTGTACGTTTTGTGTGGCAGTATGGCTTTTCAATCCATTCACATTCACTATTGCTACCAGGGGAAATTGTGAACCTCTTGTGTGTGCCATGATTTTGTGGATTCTGATATGTCTAATGAGAGGTCATATTGTGGAGGCAGCAATATGGTATGGACTAGTTGTCCATTTCAG

Fln Alignment:

CL6444Contig1___SAILRLMLILYGEWQDTHMEVHYTDIDYLVFSDAASLMVSNKSPYDRSTYRYSPLLALLLIPNSYLHHCWGKLLFSAADLLVGHLIYYILRLRGLPGKQCTFCVAVWLFNPFTFTIATRGNCEPLVCAMILWILICLMRGHIVEAAIWYGLVVHF
Q500W7_______________SMLLRVFLIVYGEWQDAHMEVRYTDVDYIVFSDAASLMASGESPYKRTTYRYSPLLALLLTPNSFFHRSWGKFLFSASDLLVGWFIHKILKQRKVPEKICTYSVMVWLFNPFTFTIGTRGNCEPIVCAMILWIILCLMQGNLLQAAFWYGLVVHF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain