SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49693

Length: 906 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene49693

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative kinase-like protein TMKL1 [Arabidopsis thaliana] sp\|P33543.1\|TMKL1_ARATH RecName: Full=Putative kinase-like protein TMKL1; Flags: Precursor emb\|CAA51385.1\| TMKL1 [Arabidopsis thaliana] dbj\|BAB01215.1\| receptor kinase [Arabidopsis thaliana] gb\|AAM	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Chromosome chr11 scaffold_14, whole genome shotgun sequence	-	-	2.411e-06	-

Source	Gene names
Sma3	AT3G24660; At2g24130; At3g24660; GSVIVT00001246001; GSVIVT00002591001; GSVIVT00007369001; GSVIVT00017148001; GSVIVT00017153001; GSVIVT00017155001; GSVIVT00017827001; GSVIVT00017830001; GSVIVT00029372001; Hcr2-0A; LOC_Os03g18630; LRR-RLK; MSD24.3; OSJNBa00

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24660.1	TMKL1 transmembrane kinase-like 1 chr3:9003641-9005751 FORWARD LENGTH=674	51%
RefSeq	Arabidopsis thaliana	NP_189109.1	putative kinase-like protein TMKL1 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002303085.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP80

Fln msg: Distance to subject end: 317 aas, your sequence is shorter than subject: 301 - 657

Fln protein: IKQSLQGDSDNILLSSWNASAHLCEWGGVKWAYENGSLVDCKNTSEGTQNLTSKNPSLVVYSIELAAAGLGGTIPKEIAKLLHLEKLYLGVNMLRGAIPLELGNSARLMSVSFSGNKLNGSIPPSVWNLCGQLVDLLLDGNDLSGYIPEPALPNVTCNNLQILDLSNNNLQGPVPLFLGQFHGLQELDLSNNSLSGTIPEALVHLNLSSLNLSLNNLSGPIPVFSQSFGNESFAGNRLCGPPLPPCAGTQVQRRSGLSPGAVAGIVIALMTAIVVCVSLLIGIGSTHNMKVLGGGRDPSLN

Protein Length: 302

Fln nts: CATAAAGCAATCCTTGCAAGGGGATTCTGATAACATTCTGCTATCTTCATGGAATGCTTCAGCTCATCTCTGTGAATGGGGAGGTGTCAAGTGGGCATATGAAAATGGGTCTCTGGTAGACTGCAAAAACACTTCTGAGGGAACCCAAAATCTGACATCTAAAAATCCATCTTTGGTGGTTTACAGCATTGAACTCGCTGCTGCAGGACTTGGTGGAACGATTCCAAAGGAGATAGCGAAGCTTCTACATTTGGAGAAGCTCTACTTGGGAGTTAACATGCTCAGAGGAGCTATACCTTTAGAGCTTGGGAATAGTGCTAGGCTTATGTCTGTTTCATTCTCAGGGAATAAGCTCAATGGCAGCATTCCTCCTTCAGTATGGAATCTCTGTGGGCAGCTTGTGGATCTTCTCCTAGACGGTAACGATTTGAGTGGTTACATACCAGAGCCTGCTTTGCCTAATGTTACCTGCAATAATTTGCAGATTTTAGACTTGAGCAATAACAATCTGCAAGGACCCGTGCCTCTGTTTCTTGGACAGTTTCATGGTCTGCAAGAGTTGGATCTGAGCAATAACTCTTTGTCTGGTACAATACCTGAAGCGCTTGTCCATCTGAATTTATCAAGTTTGAATTTGTCTCTTAACAATCTCAGTGGACCCATTCCGGTGTTTTCACAGAGTTTTGGCAATGAGTCATTTGCAGGAAACAGGCTCTGTGGGCCTCCTCTTCCCCCTTGTGCAGGAACTCAAGTTCAGAGGCGTTCTGGACTGAGCCCTGGGGCAGTTGCAGGAATTGTTATTGCATTGATGACGGCCATTGTTGTTTGTGTATCCTTATTGATAGGCATTGGAAGTACCCACAATATGAAAGTGCTGGGAGGAGGAAGGGACCCTTCTTTGAATGA

Fln Alignment:

CL2249Contig1___IKQSLQGDS--DNILLSSWNASAHLCEWGGVKWAYENGSLVDCKNTSEGTQNLTS-KNPSLVVYSIELAAAGLGGTIPKEIAKLLHLEKLYLGVNMLRGAIPLELGNSARLMSVSFSGNKLNGSIPPSVWNLCGQLVDLLLDGNDLSGYIPEPALPNVTCNNLQILDLSNNNLQGPVPLFLGQFHGLQELDLSNNSLSGTIPEALVHXXXXXXXXXXXXXXGPIPVFSQSFGNESFAGN--RLCGPPLPPCA-GTQVQRRSGLSPGAVAGIVIALMTAIVVCVSLLIGIGSTHNMKVLGGGRD
B8LP80_______________IKGTLGGQSSGDNVLLSTWNASIPLCQWRGIQWIKADGTHVNC-NTSLVRTNLTLYRDPSISAYSIELPAVGLEGTIPKELAKLSSLQRLYLNINMLTGPIPLELFNSLSLAVLSLGQNRLSGSIPPSLWNLCGHLVELDLDQNELVGTIPDPALPNVTCSSLQKLDFSDNHLEGSIPSFLPSFRSLQDLDLSNNSFSGTIPEALANLSLSVLNFSHNNLTGAIPNFAQNFSQDAFVGNSPALCGAPLQACGKARQIGHRPRLSPGAVAGIVIGLMAFLVVALSILIALGSSHDRKIRGEFRN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain