SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49634

Length: 1053 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene49634

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02475, Met_10, Met-10+ like-protein	-	-	4.0e-35	33%
FL-Next	sp=tRNA wybutosine-synthesizing protein 2/3/4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	tRNA wybutosine-synthesizing protein 3 homolog	-	-	2.544e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	4.647e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	4.647e-06	%
Sma3	Tetracycline biosynthesis	00253	4.647e-06	%
Sma3	Histidine metabolism	00340	4.647e-06	%
Sma3	Tyrosine metabolism	00350	4.647e-06	%
Sma3	Phenylalanine metabolism	00360	4.647e-06	%
Sma3	Tryptophan metabolism	00380	4.647e-06	%
Sma3	Benzoxazinoid biosynthesis	00402	4.647e-06	%
Sma3	Selenocompound metabolism	00450	4.647e-06	%
Sma3	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	4.647e-06	%
Sma3	Polycyclic aromatic hydrocarbon degradation	00624	4.647e-06	%
Sma3	Methane metabolism	00680	4.647e-06	%
Sma3	Porphyrin and chlorophyll metabolism	00860	4.647e-06	%
Sma3	Carotenoid biosynthesis	00906	4.647e-06	%
Sma3	Phenylpropanoid biosynthesis	00940	4.647e-06	%
Sma3	Flavonoid biosynthesis	00941	4.647e-06	%
Sma3	Anthocyanin biosynthesis	00942	4.647e-06	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	4.647e-06	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	4.647e-06	%
Sma3	Insect hormone biosynthesis	00981	4.647e-06	%
Sma3	Biosynthesis of type II polyketide products	01057	4.647e-06	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	4.647e-06	%
Sma3	Metabolic pathways	01100	4.647e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	4.647e-06	%

Source	Gene names
Sma3	At4g04670; GSVIVT00010754001; LOC_Os07g33100; MICPUCDRAFT_58919; MICPUN_58711; OSTLU_34943; Os07g0515000; OsI_26187; OsJ_24443; Ot09g02370; P0048D08.111; PHYPADRAFT_149655; POPTRDRAFT_831045; RCOM_0904600; T19J18.2; THAPSDRAFT_262512;

Source	GOs	Term	Type	e value	Identity
Sma3	methyltransferase activity	GO:0008168	Molecular Function	0.0	-
Sma3	tRNA processing	GO:0008033	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	JmjC domain	IPR003347	-	-
Sma3	tRNA transferase Trm5/Tyw2	IPR003402	-	-
Sma3	tRNA wybutosine-synthesizing protein	IPR003827	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Cupin 4	IPR013109	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G04670.1	Met-10+ like family protein / kelch repeat-containing protein chr4:2367603-2371990 FORWARD LENGTH=995	67%
RefSeq	Arabidopsis thaliana	NP_567268.2	tRNA wybutosine synthesizing protein 2-like protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002304908.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8W4K1

Fln msg: your sequence is shorter than subject: 287 - 995

Fln protein: LREAVSLLTKQKGLSPSILEELPSRWERLGDMAVLPITSFKDDSWHSLGNELWVTVARSLGVQRLARQGRIASTGTRDSTLELLFGDSGWVQHKENGILYCFDATKCMFSSGNISEKLRMAKLDCRNEIVVDLFAGVGYFVLPFLLKAGAKLVYACEWNPNALFALRHNISVNGVRNRCIILEGDNRITAPKGVADRVCLGLLPSSEISWCTAVRALRPEGGVLHVHGNVKDSEEDSWLENLTLSIKTFALNEGYIWNVTIEHLERVKWYAPHIRHLVADVRCTSM*

Protein Length: 288

Fln nts: ATTGCGAGAAGCAGTATCTTTGTTAACAAAGCAAAAAGGGCTCTCTCCATCTATCCTAGAAGAATTGCCAAGTCGGTGGGAACGACTTGGGGATATGGCAGTGTTACCAATTACTTCATTCAAGGATGACAGTTGGCATTCCCTTGGTAATGAGCTTTGGGTCACTGTTGCAAGATCACTTGGTGTGCAGCGTCTAGCTCGCCAGGGTCGAATTGCTTCAACAGGCACAAGGGACAGCACTTTAGAACTCCTTTTTGGTGATAGTGGTTGGGTGCAACACAAAGAAAATGGAATACTGTATTGTTTTGATGCAACAAAGTGTATGTTTTCCTCTGGAAACATATCAGAGAAACTTCGCATGGCCAAGCTGGACTGCAGAAATGAAATAGTAGTGGATTTATTTGCTGGAGTTGGATATTTTGTTCTGCCCTTCCTCTTAAAAGCTGGTGCAAAACTGGTATATGCTTGCGAGTGGAATCCTAATGCATTATTTGCTCTTCGGCATAACATTTCTGTAAATGGTGTTAGAAATCGGTGCATTATTTTGGAGGGTGACAACCGCATCACAGCTCCAAAGGGAGTTGCAGATAGGGTGTGCCTTGGCCTTTTGCCAAGCAGCGAGATCAGCTGGTGTACAGCTGTCAGAGCTTTGAGGCCTGAAGGGGGCGTACTACATGTACATGGGAATGTAAAAGACTCTGAGGAGGATTCCTGGTTGGAGAATCTCACATTATCAATAAAGACGTTTGCACTTAATGAAGGATATATATGGAATGTGACGATTGAGCATTTGGAGCGAGTTAAATGGTATGCTCCACATATCCGACACCTCGTTGCAGATGTTAGATGTACGAGTATGTAA___ATAAGGAGTTGTAGAGAGTGTACTTTCTACACATGCAGGGAAGCCTGTATGGAATTTTGATCCATATTTTTCATTTATTTGGCTCTCAAGTCAGCATCCTGTATGGAATTTTGATCAATATTTTTCATTATTTGGCTCTCAAGTCAGCGTCCTGTGTGGGATTTGATCAATGCTTCTCATTTATTTGTTTG

Fln Alignment:

CL1267Contig1___LREAVSLLTKQKGLSPSILEELPSRWERLGDMAVLPITSFKDDSWHSLGNELWVTVARSLGVQRLARQGRIASTGTRDSTLELLFGDSGWVQHKENGILYCFDATKCMFSSGNISEKLRMAKLDCRNEIVVDLFAGVGYFVLPFLLKAGAKLVYACEWNPNALFALRHNISVNGVRNRCIILEGDNRITAPKGVADRVCLGLLPSSEISWCTAVRALRPEGGVLHVHGNVKDSEEDSWLENLTLSIKTFALNEGYIWNVTIEHLERVKWYAPHIRHLVADVRC
Q8W4K1_______________MREDITSILKQKGLPEELLDELPQKWERLGDIVVVPATSFKDPTWSSINDEVWCAVSKSLSANRLARQGRVEPNGTRDSTLEILVGDNGWVNHRENGILYSFDATKCMFSWGNLSEKLRMGNMACENEVVVDLFAGIGYFVLPFLVRAKAKLVYACEWNPHAIEALRRNVEANSVSERCIILEGDNRITAPKGVADRVNLGLIPSSEGSWVTAIQALRPEGGILHVHGNVKDSDESSWGEHVTKTLSDIARAEGRSWEVTVEHIEKVKWYAPRIRHLVADVRC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain