SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49433

Length: 2518 nt

UniGene Fasta

>sp_v3.0_unigene49433
ACAAATGATTTTAGGCTTAAATTCTGCAGAAATCATGTGATAGAATTGAATGACAAGCATATGCAAAATATTGCCATTCCTGGAGGCCCATTAATACCAAATGTGTCAAGGGATATCAAGTGCGATAAAGGAGAACGGATACGGTACACATCAGATTTTTTGGAGTTCAACCAGATGTCAGAGCTATGGAATCAGAAATCCTCTATACAAGGAAAGATTCCTTCAGGTCACTTCAATACCATGTATGGACTGACAGGGTCCTGGCAGGCAGATGCTACCGAAACAAAATCCTTAGCATTTGATGGCATCTTTATCTCTCTTTACAATCTTCACCTTACAAGGTTTCCATCAGTTCTCAAGGAAAAAGTCAAGAAAGAAGTCCCATCTTCTTGGGAACCGGAAGCCATTGCAAGGTTTATTAGAACTTACGGAACCCACATAATTGTGGGTCTGGAAGTTGGAGGTCAAGATGTAGCATTAGTGAGGCAGAATCATTCTTCCTGTATACCAGCTTTTCTACTTAAGAGGCATCTGGAAAATCTAGGGGATCAGTTGTTTACAGAGTCCTGTAATCTTTTGCCCATGAATCTGAAGCACAGAGAATACAAACAGAAGGTTCCTGAGGCTTTTAAAAACGTTTTTCAACCAAATCCTGTTCTTCTGGACAGCTTTTCAGCCACATCAAGTAAAAATGGGTTGACAGTCATATGCTCTAAAAGAGGAGGATTGGTATCTTTGCCGTCACATAGTGAATGGCTTCTTACAGTGCCCACCAATCCAGATGTTATACGATTTAGATTCATGCCTATAACATCTCTTCTAACTGGTGTTCCTGGCAGTGGCTTTTTGAATCAAGCAATCAATCTATACCTTCGATACAAGCCTCCTATCGATGATTTGCAGTACTTCTTAGAATTCCAAGTTCATCTGCAATGGGCTCCATTGCACAACGAGCTACCACTTGGGCCTCCAAGGAAAGGAGTTCTATGCCCCTCTATTAAATTTAGTTTGATGGGCCCAAAACTTTACGTCAGCACAGCTCAGGTCTCAGTTGGTAAAAGTCTTGTCACCGGGCTCCGACTGTATCTTGAAGGAATGAAGTGCAACAGGTTGGCAATACACCTCCAACATCTTTCTACTATTCCAAAGATTCTCCAACCTCGTTGGAATGAGTCTGTCATTTCTCATCCCTCAAAGTGGAGAGGATCAGATGAGAATGATACAAATTATTTTGAGCCCGTTCAGAGTAAGACCTATTCTCATGTGTGCACAATGCCCATCCAGTATGACCCCAGTTGGGCCTCAGAAGGTGGGGGTGTTTATGTTGTAACTGGTGCTCAACTTCAGGTTAAAGGAACTGGGACTAAGAATGTGTTGCATCTGCGTCTGCTTTTCACAAGGATACCAAATTGCAGTATTGAAAAGTCTGTTTGGGGTCATGCACCAGCAGTGTCACAGAGATCAGGGTTCCTCTCAACGCTTTCAACGTTCAGCTCTACCTTCTCAACATCTCAGCCACAAAGCAAGCCCGTTCCTGTTGTGTTAAATTCAGCAATTTATCCCAAGGGCCCACCGGTGCCGGTTCGGTCCCCTAAACTCCTCAAATGTGTAGAGACTGCAGAAATCATCAAGGGGCCTCAAGACAGCCCTGGACATTGGTTATTGACTGCAGCTAAATTGGATCTGGATAGAGGTAAAATATCTTTACATGGCGAATTCTCACTTCTCAATTATTGCACTTAAGATCAGGCTACCCATTTCTCACTCTGCAGTGTCCTGAAGGGAAGAGATGGCTTTCTACAGTCTTAACATCACCTTAGAATCCCAACAAAAACATGTTATTGGGTTTTCCACATTTGAAGAATCCATATCCTGTGAAAAGGGAGATATTCCAAATTTTTATTGGAGTAGACCATGAATAGTTCTGTTTCAAGATCGCGTATAGACCATGAAAAACCCTCTTTCAAGATCGGGTATATCCTCCAGCTAAATTGGGTCCTATTGTGAATGTGTGAAAATTAACTCTGGTGTCATAAGTTGGGTGAAATTGTAAATTTTAGCGTTGAAGGCCAAAATCTTACCGTTTGGTATGTGCTGAAGGAGCCATGGGATAGCTGTGAGGGCCTTAATTGACAGCATTTTTGTGCAGAAGTGATACAAATTTCCATGTGCATTTCTGGTCCAGGAGATTACTTTCTATCATCCGTGGCCCGTTGTCATTGAATGTCTGGTGTCATGAATCCTTCTCTGCTCTTTCTACTGTCTTGTTTTAGCCTTGTCATTACAGGAACGAGCGGTTCTGGTTCTAAGCAATAGCTCAATGCATAAAGCGTAATCTGTCTGTATGATTAATATGATTGCCTTCCAATACAGGTTGGTTAAAAGTTCTGTTATGGTTGTATTGTCTCTCTTGGGCTGAAGTACAGTATTTTTCATGCCACACTGATAAAATTTCCAAGGTGGTCCTTAATAAGCTGTAACTTTTGCTTCGTTCTTCAATATGATGTTCTTTTAACTA

Ace file of the UniGene sp_v3.0_unigene49433

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MAC/Perforin domain-containing protein [Arabidopsis thaliana] gb\|AAM20539.1\| unknown protein [Arabidopsis thaliana] gb\|AAO00959.1\| unknown protein [Arabidopsis thaliana] gb\|AEE29225.1\| MAC/Perforin domain-containing protein [Arabidopsis thaliana]	-	-	0.0	46%
FL-Next	sp=MACPF domain-containing protein At1g14780; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%

Source	Gene names
Sma3	AT4g24290; At1g14780; At1g28380; At1g29690; At4g24290; F15D2.24; GSVIVT00003061001; GSVIVT00019234001; GSVIVT00030609001; GSVIVT00033508001; GSVIVT00035282001; GSVIVT00035793001; GSVIVT00037483001; MA4_82I11.22; MBP_81C12.22; MtrDRAFT_AC140550g15v2; OJ121

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	immune response	GO:0006955	Biological Process	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	regulation of salicylic acid metabolic process	GO:0010337	Biological Process	-
Sma3	defense response by callose deposition	GO:0052542	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Membrane attack complex component/perforin/complement C9	IPR001862	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G14780.1	MAC/Perforin domain-containing protein chr1:5091020-5093873 FORWARD LENGTH=627	47%
RefSeq	Arabidopsis thaliana	NP_172931.1	MAC/Perforin domain-containing protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002312471.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8L612

Fln msg: your sequence is shorter than subject: 581 - 627

Fln protein: TNDFRLKFCRNHVIELNDKHMQNIAIPGGPLIPNVSRDIKCDKGERIRYTSDFLEFNQMSELWNQKSSIQGKIPSGHFNTMYGLTGSWQADATETKSLAFDGIFISLYNLHLTRFPSVLKEKVKKEVPSSWEPEAIARFIRTYGTHIIVGLEVGGQDVALVRQNHSSCIPAFLLKRHLENLGDQLFTESCNLLPMNLKHREYKQKVPEAFKNVFQPNPVLLDSFSATSSKNGLTVICSKRGGLVSLPSHSEWLLTVPTNPDVIRFRFMPITSLLTGVPGSGFLNQAINLYLRYKPPIDDLQYFLEFQVHLQWAPLHNELPLGPPRKGVLCPSIKFSLMGPKLYVSTAQVSVGKSLVTGLRLYLEGMKCNRLAIHLQHLSTIPKILQPRWNESVISHPSKWRGSDENDTNYFEPVQSKTYSHVCTMPIQYDPSWASEGGGVYVVTGAQLQVKGTGTKNVLHLRLLFTRIPNCSIEKSVWGHAPAVSQRSGFLSTLSTFSSTFSTSQPQSKPVPVVLNSAIYPKGPPVPVRSPKLLKCVETAEIIKGPQDSPGHWLLTAAKLDLDRGKISLHGEFSLLNYCT*

Protein Length: 582

Fln nts: ACAAATGATTTTAGGCTTAAATTCTGCAGAAATCATGTGATAGAATTGAATGACAAGCATATGCAAAATATTGCCATTCCTGGAGGCCCATTAATACCAAATGTGTCAAGGGATATCAAGTGCGATAAAGGAGAACGGATACGGTACACATCAGATTTTTTGGAGTTCAACCAGATGTCAGAGCTATGGAATCAGAAATCCTCTATACAAGGAAAGATTCCTTCAGGTCACTTCAATACCATGTATGGACTGACAGGGTCCTGGCAGGCAGATGCTACCGAAACAAAATCCTTAGCATTTGATGGCATCTTTATCTCTCTTTACAATCTTCACCTTACAAGGTTTCCATCAGTTCTCAAGGAAAAAGTCAAGAAAGAAGTCCCATCTTCTTGGGAACCGGAAGCCATTGCAAGGTTTATTAGAACTTACGGAACCCACATAATTGTGGGTCTGGAAGTTGGAGGTCAAGATGTAGCATTAGTGAGGCAGAATCATTCTTCCTGTATACCAGCTTTTCTACTTAAGAGGCATCTGGAAAATCTAGGGGATCAGTTGTTTACAGAGTCCTGTAATCTTTTGCCCATGAATCTGAAGCACAGAGAATACAAACAGAAGGTTCCTGAGGCTTTTAAAAACGTTTTTCAACCAAATCCTGTTCTTCTGGACAGCTTTTCAGCCACATCAAGTAAAAATGGGTTGACAGTCATATGCTCTAAAAGAGGAGGATTGGTATCTTTGCCGTCACATAGTGAATGGCTTCTTACAGTGCCCACCAATCCAGATGTTATACGATTTAGATTCATGCCTATAACATCTCTTCTAACTGGTGTTCCTGGCAGTGGCTTTTTGAATCAAGCAATCAATCTATACCTTCGATACAAGCCTCCTATCGATGATTTGCAGTACTTCTTAGAATTCCAAGTTCATCTGCAATGGGCTCCATTGCACAACGAGCTACCACTTGGGCCTCCAAGGAAAGGAGTTCTATGCCCCTCTATTAAATTTAGTTTGATGGGCCCAAAACTTTACGTCAGCACAGCTCAGGTCTCAGTTGGTAAAAGTCTTGTCACCGGGCTCCGACTGTATCTTGAAGGAATGAAGTGCAACAGGTTGGCAATACACCTCCAACATCTTTCTACTATTCCAAAGATTCTCCAACCTCGTTGGAATGAGTCTGTCATTTCTCATCCCTCAAAGTGGAGAGGATCAGATGAGAATGATACAAATTATTTTGAGCCCGTTCAGAGTAAGACCTATTCTCATGTGTGCACAATGCCCATCCAGTATGACCCCAGTTGGGCCTCAGAAGGTGGGGGTGTTTATGTTGTAACTGGTGCTCAACTTCAGGTTAAAGGAACTGGGACTAAGAATGTGTTGCATCTGCGTCTGCTTTTCACAAGGATACCAAATTGCAGTATTGAAAAGTCTGTTTGGGGTCATGCACCAGCAGTGTCACAGAGATCAGGGTTCCTCTCAACGCTTTCAACGTTCAGCTCTACCTTCTCAACATCTCAGCCACAAAGCAAGCCCGTTCCTGTTGTGTTAAATTCAGCAATTTATCCCAAGGGCCCACCGGTGCCGGTTCGGTCCCCTAAACTCCTCAAATGTGTAGAGACTGCAGAAATCATCAAGGGGCCTCAAGACAGCCCTGGACATTGGTTATTGACTGCAGCTAAATTGGATCTGGATAGAGGTAAAATATCTTTACATGGCGAATTCTCACTTCTCAATTATTGCACTTAA___GATCAGGCTACCCATTTCTCACTCTGCAGTGTCCTGAAGGGAAGAGATGGCTTTCTACAGTCTTAACATCACCTTAGAATCCCAACAAAAACATGTTATTGGGTTTTCCACATTTGAAGAATCCATATCCTGTGAAAAGGGAGATATTCCAAATTTTTATTGGAGTAGACCATGAATAGTTCTGTTTCAAGATCGCGTATAGACCATGAAAAACCCTCTTTCAAGATCGGGTATATCCTCCAGCTAAATTGGGTCCTATTGTGAATGTGTGAAAATTAACTCTGGTGTCATAAGTTGGGTGAAATTGTAAATTTTAGCGTTGAAGGCCAAAATCTTACCGTTTGGTATGTGCTGAAGGAGCCATGGGATAGCTGTGAGGGCCTTAATTGACAGCATTTTTGTGCAGAAGTGATACAAATTTCCATGTGCATTTCTGGTCCAGGAGATTACTTTCTATCATCCGTGGCCCGTTGTCATTGAATGTCTGGTGTCATGAATCCTTCTCTGCTCTTTCTACTGTCTTGTTTTAGCCTTGTCATTACAGGAACGAGCGGTTCTGGTTCTAAGCAATAGCTCAATGCATAAAGCGTAATCTGTCTGTATGATTAATATGATTGCCTTCCAATACAGGTTGGTTAAAAGTTCTGTTATGGTTGTATTGTCTCTCTTGGGCTGAAGTACAGTATTTTTCATGCCACACTGATAAAATTTCCAAGGTGGTCCTTAATAAGCTGTAACTTTTGCTTCGTTCTTCAATATGATGTTCTTTTAACTA

Fln Alignment:

CL21756Contig1___TNDFRLKFCRN--------HVIELNDKHMQNIAIPGGPLIPNVSRDIKCDKGERIRYTSDFLEFNQMSELWNQKSSIQGKIPSGHFNTMYGL-TGSWQADATETKSLAFDGIFISLYNLHLTRFPSVLK--EKVKKEVPSSWEPEAIARFIRTYGTHIIVGLEVGGQDVALVRQNHSSCIPAFLLKRHLENLGDQLFTESCNLLPMNLK----HREYKQKVPEAFKNVFQPNPVLLDSFSATSSKNGLTVICSKRGGLVSLPSHSEWLLTVPTNPDVIRFRFMPITSLLTGVPGSGFLNQAINLYLRYKPPIDDLQYFLEFQVHLQWAPLHNELPLG-PPRKGVLCPSIKFSLMGPKLYVSTAQVSVGKSLVTGLRLYLEGMKCNRLAIHLQHLSTIPKILQPRWNESVISHPSKWRGSDE--NDTNYFEPVQSKTYSHVCTMPIQYDPSW-------ASEGGGVYVVTGAQLQVKGTGTKNVLHLRLLFTRIPNCSIEKSVWGHAP-AVSQRSGXXXXXXXXXXXXXXXQP--QSKPVPVVLNSAIYPKGPPVPVRSPKLLKCVETAEIIKGPQDSPGHWLLTAAKLDLDRGKISLHGEFSLLN
Q8L612_______________TADFRLKYCKDGDGSAGDDRLVVLDQTQNRELHIPGFGVFQNVSADINCDKGERTRFRSDILDFNKMSEYFNQRSSVTGKIPSGNFNATFGFQSGSWATDAANVKSLGLDASVVTLFNLHIHN-PNRLRLTDRVRNAVPSSWDPQLLARFIERYGTHVITGVSVGGQDVVVVRQDKSSDLDNDLLRHHLYDLGDQLFTGSCLLSTRRLNKAYHHSHSQPKFPEAF-NVFDDKQTVAFNNFSINSQNGITVICAKRGGDGRAKSHSEWLITVPDKPDAINFNFIPITSLLKDVPGSGLLSHAMSLYLRYKPPLMDLQYFLDFSGPRAWAPVHNDLPFGAAPNMASAYPALHINFMGPKLYVNTTPVTSEKNPVTGMRFFLEGKKCNRLAIHLQHLDNTRTTVGEKITDEHI-----WRGSDQITDNDRYFEPLNGKKFSHVCTVPVKYDPNWIKTTSNHKSQNDVAFIVTGAQLEVKKHGSKSVLHLRLRYTKVSDHYVVQNSWVHGPIGTSQKSGIFSSMSMPLTSGSVHHNMIQKDKNEVVLDSGVFPGGPPVPANN-KIVKFVDLSQLCRGPQHSPGHWLVTGVRLYLDKGKLCLHVKFALLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain