SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49333

Length: 214 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene49333
GAGCAACCGGGCGGCGTTTCACCTGTATACCCAAACACTGGGCTACAAAATTCACGATATNAGTACGCGGGCGGCGTTTCACCTGTATACCCAAACACTGGGCTACAAAATTCACGATATTGAGGCTAAGTACTATGCTGATGGCGAGGATGCCTATGATATGCGCAAACAGCTGAGAGTGAAGTCTGATGGTAAGCATCATCATCATCATCAT

Ace file of the UniGene sp_v3.0_unigene49333 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peptide alpha-N-acetyltransferase [Arabidopsis thaliana] dbj\|BAB10599.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK96745.1\| Unknown protein [Arabidopsis thaliana] gb\|AAL47392.1\| unknown protein [Arabidopsis thaliana] gb\|AAM64579.1\| silencing gr	-	-	3.0e-12	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Silencing group B protein	-	-	6.0e-12	-

Source	Gene names
Sma3	At5g13780; CHLREDRAFT_95444; GSVIVT00028699001; H0410G08.10; MICPUCDRAFT_20989; MXE10.5; NAT1; OSJNBa0043L09.27; Os04g0635800; OsI_17581; OsI_17596; OsJ_16314; PHATRDRAFT_51345; PHYPADRAFT_197972; POPTRDRAFT_641307; POPTRDRAFT_650021; RCOM_0962820; SGB901

Source	GOs	Term	Type	Identity
Sma3	N-acetyltransferase activity	GO:0008080	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Aluminium resistance	IPR009651	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13780.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein chr5:4447610-4448603 REVERSE LENGTH=192	2.0e-17	76%
RefSeq	Arabidopsis thaliana	NP_196882.1	peptide alpha-N-acetyltransferase [Arabidopsis thaliana]	2.0e-17	76%
RefSeq	Populus trichocarpa	XP_002298415.1	predicted protein [Populus trichocarpa]	2.0e-19	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSV4

Fln msg: Distance to subject end: 28 aas, your sequence is shorter than subject: 71 - 192

Fln protein: SNRAAFHLYTQTLGYKIHDISTRAAFHLYTQTLGYKIHDIEAKYYADGEDAYDMRKQLRVKSDGKHHHHHH

Protein Length: 72

Fln nts: GAGCAACCGGGCGGCGTTTCACCTGTATACCCAAACACTGGGCTACAAAATTCACGATATtAGTACGCGGGCGGCGTTTCACCTGTATACCCAAACACTGGGCTACAAAATTCACGATATTGAGGCTAAGTACTATGCTGATGGCGAGGATGCCTATGATATGCGCAAACAGCTGAGAGTGAAGTCTGATGGTAAGCATCATCATCATCATCAT

Fln Alignment:

CL20536Contig1___STRAAFHLYTQTLGYKIHDIEAKYYADGEDAYDMRKQLRVKSDGK
A9NSV4_______________SNRAAFHLYTQTLGYKIHDIEAKYYADGEDAYDMRKQLKVKSDGK

SSRs (tot: 1)

Start position	End position	Sequence	Length
1	18	ATG ATG ATG ATG ATG ATG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain