SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49292

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene49292
GCACGACTGGAGCGACGAGGAATGCATCAAAATACTGAAGAAGTGCAGAGAGGCCATCCCTGAGACAGGGAAGGTGATCATAGTAGAAGTGGTGCTGGATGAGGTCCAGGATCAAAATGGAAAAAAGAATTCGGTTATGGATCCAGATTTAGGCATCGTGTTTGATCTGGTAATGGTGGCGCACAGTTCGGGCGGGAAAGAGAGAAGCGAGGAAGAGTGGAAGAAGATTTTATTGGAAG

Ace file of the UniGene sp_v3.0_unigene49292

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	O-methyltransferase n=3 Tax=Pinus RepID=O24287_PINRA	-	-	7.0e-26	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Caffeic acid O-methyltransferase	-	-	9.218e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	(Iso)eugenol O-methyltransferase.	EC:2.1.1.146	-	5.362e-07	-

Source	Gene names
Sma3	COMT-1; COMTL3; GSVIVT00025990001; GSVIVT00025994001; Gsi-75; POPTRDRAFT_827707; RCOM_1175840; RCOM_1175850; RcOMT3; VITISV_006040; VITISV_028341; cOMT; comt; omt;

Source	GOs	Term	Type	Identity
Sma3	O-methyltransferase activity	GO:0008171	Molecular Function	-
Sma3	catechol O-methyltransferase activity	GO:0016206	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	O-methyltransferase, family 2	IPR001077	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Plant methyltransferase dimerisation	IPR012967	-	-
Sma3	O-methyltransferase, COMT, eukaryota	IPR016461	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002329411.1	alkaloid o-methyltransferase related [Populus trichocarpa]	2.0e-23	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAR7

Fln msg: Distance to subject end: 23 aas, your sequence is shorter than subject: 79 - 379

Fln protein: HDWSDEECIKILKKCREAIPETGKVIIVEVVLDEVQDQNGKKNSVMDPDLGIVFDLVMVAHSSGGKERSEEEWKKILLE

Protein Length: 80

Fln nts: GCACGACTGGAGCGACGAGGAATGCATCAAAATACTGAAGAAGTGCAGAGAGGCCATCCCTGAGACAGGGAAGGTGATCATAGTAGAAGTGGTGCTGGATGAGGTCCAGGATCAAAATGGAAAAAAGAATTCGGTTATGGATCCAGATTTAGGCATCGTGTTTGATCTGGTAATGGTGGCGCACAGTTCGGGCGGGAAAGAGAGAAGCGAGGAAGAGTGGAAGAAGATTTTATTGGAAG

Fln Alignment:

CL20134Contig1___HDWSDEECIKILKKCREAIPETGKVIIVEVVLDEVQDQN--GKKNSVMDPDLGIVFDLVMVAHSSGGKERSEEEWKKILLE
D5AAR7_______________HDWSDEDCIKILKNCRKAIPDTGKVIIVDVVLDANQGDDIVKKKKKALDPNLGIVFDLVMVAHSSGGKERTEKEWKTILLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain