SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49273

Length: 425 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene49273
GGGAAGGGGGAATTTGTGTAGATCAACTCTTCTTCCATGACCCAGATGGGTTTATGATTGAGATCTGCAACTGCGAGAATATGCCGGTAGTGCCCTTGGCTTCTACGCCATCTGCACCTTGCACTCTCAACTCGTGTCAATCCCAGCAACAGAAGCAGATATCAACACCATATTCTGCATCTTCTGCAGACACTCCTAATACCTCTCGACAAATTCTCCAAGTTCTTTAGGGAAATGATTCCANNNNNNNNACTTAATACTATGTTTGTTTTGTTTTAGAATCACTGTGATTCAGCTGTCGTATGCATAAGTGGTGTGTGGAGTGTCTTTGATCAAGTATGTGACTATGAATGTTTGGAATTTGGAAATAATATGAACTCTGTAATTATATTACCATCTGATTAATCATTGGGTGATTCGTTCGT

Ace file of the UniGene sp_v3.0_unigene49273 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana] gb\|AEE36365.1\| lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana]	-	-	4.0e-11	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Lactoylglutathione lyase, putative	-	-	7.45e-08	-

Source	Gene names
Sma3	AT1G80160; At1g15380; At1g80160; F18B13.24; GSVIVT00000378001; GSVIVT00016866001; GSVIVT00035399001; GSVIVT00036876001; OSJNBa0011L07.2; OSJNBa0089K24.11; OSJNBa0091D06.24; Os01g0173600; Os04g0538900; Os05g0171900; OsI_00595; OsI_16808; OsI_18636; OsJ_005

Source	GOs	Term	Type	e value	Identity
Sma3	lyase activity	GO:0016829	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein chr1:30151101-30151930 FORWARD LENGTH=167	2.0e-15	62%
RefSeq	Arabidopsis thaliana	NP_001077851.1	lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana]	2.0e-15	62%
RefSeq	Populus trichocarpa	XP_002298106.1	predicted protein [Populus trichocarpa]	2.0e-17	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1X4

Fln msg: your sequence is shorter than subject: 76 - 197

Fln protein: EGGICVDQLFFHDPDGFMIEICNCENMPVVPLASTPSAPCTLNSCQSQQQKQISTPYSASSADTPNTSRQILQVL*

Protein Length: 77

Fln nts: GGGAAGGGGGAATTTGTGTAGATCAACTCTTCTTCCATGACCCAGATGGGTTTATGATTGAGATCTGCAACTGCGAGAATATGCCGGTAGTGCCCTTGGCTTCTACGCCATCTGCACCTTGCACTCTCAACTCGTGTCAATCCCAGCAACAGAAGCAGATATCAACACCATATTCTGCATCTTCTGCAGACACTCCTAATACCTCTCGACAAATTCTCCAAGTTCTTTAG___GGAAATGATTCCAcagtcagtACTTAATACTATGTTTGTTTTGTTTTAGAATCACTGTGATTCAGCTGTCGTATGCATAAGTGGTGTGTGGAGTGTCTTTGATCAAGTATGTGACTATGAATGTTTGGAATTTGGAAATAATATGAACTCTGTAATTATATTACCATCTGATTAATCATTGGGTGATTCGTTCGT

Fln Alignment:

CL19930Contig1___EGGICVDQLFFHDPDGFMIEICNCENMPVVPLASTPSAPCTLNSCQSQ--------QQKQISTPYSASSADTPNTSRQILQV
A9P1X4_______________EGGISVDQLFFHDPDDFMIEICNCDNLPVEYLGSAGSA-CPLN-CHSNASSTNAALQQQQI----SASCASAATISHQMLRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain