SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49199

Length: 221 nt

UniGene Fasta

>sp_v3.0_unigene49199
TGAAGCTTGATGTAGAAATTGGTGTAAAGTTACAGTTTTTCAAGTGGGCTGCCAAGAAAAAGAATTTCAAGCATGATTCCACCACATATATGCCCTTCATTCGTTGCTTAGCGCAGGCGGGACTAGTGGGTGAAATGTGGCAGACAGTGCAAAAGATGGTGAAAAGTGACTGTGGCATGAATCCTAGCATATTGTCTGAAATTATTAGGATACTAGGCAAG

Ace file of the UniGene sp_v3.0_unigene49199

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LW84.1\|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010 dbj\|BAB02667.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE75762.1\| pentatricopeptide	-	-	2.0e-09	40%
FL-Next	sp=Pentatricopeptide repeat-containing protein At3g16010; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%

Source	Gene names
Sma3	GSVIVT00034422001; POPTRDRAFT_640705; RCOM_0980860;

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16010.1	Pentatricopeptide repeat (PPR-like) superfamily protein chr3:5434142-5436244 FORWARD LENGTH=642	3.0e-13	51%
RefSeq	Arabidopsis thaliana	NP_188222.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	4.0e-13	51%
RefSeq	Populus trichocarpa	XP_002299640.1	predicted protein [Populus trichocarpa]	8.0e-18	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LW84

Fln msg: Distance to subject end: 468 aas, your sequence is shorter than subject: 73 - 642

Fln protein: KLDVEIGVKLQFFKWAAKKKNFKHDSTTYMPFIRCLAQAGLVGEMWQTVQKMVKSDCGMNPSILSEIIRILGK

Protein Length: 74

Fln nts: TGAAGCTTGATGTAGAAATTGGTGTAAAGTTACAGTTTTTCAAGTGGGCTGCCAAGAAAAAGAATTTCAAGCATGATTCCACCACATATATGCCCTTCATTCGTTGCTTAGCGCAGGCGGGACTAGTGGGTGAAATGTGGCAGACAGTGCAAAAGATGGTGAAAAGTGACTGTGGCATGAATCCTAGCATATTGTCTGAAATTATTAGGATACTAGGCAAG

Fln Alignment:

CL19018Contig1___KLDVEIGVKLQXXXXXXXXXXXXHDSTTYMPFIRCLAQAGLVGEMWQTVQKMVKSD-CGMNPSILSEIIRILGK
Q9LW84_______________EIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain