SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49191

Length: 304 nt

UniGene Fasta

>sp_v3.0_unigene49191
GTTGTTTTGTAGGATACGTAAAGGCTTGGAACCTTTGGCTCAAGTTTTCAAACAGTACGTTACTGATGAGGTTACATCATTAGTCAAGCACGCGGAAGATGCAGCAAACAATGAAAAGGAGTTTCTAGGGGAAGTTCTTAAATTGTGTTGCAAGCGCTTGCAATATGTCAATGAGTGTTTTATGGACCATTCCCTTTTCCACAAGGCACTGAAGGAAGCATTTGGGGTATTTTGTAACAAGGAAGTTACAGGAAAAAGGATTGCAGAATTATTGGTTACATTTTTTGACAACATCTTGAAAAAG

Ace file of the UniGene sp_v3.0_unigene49191

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cullin-like protein [Oryza sativa Japonica Group] gb\|AAQ01196.1\| CUL1 [Oryza sativa Japonica Group]	-	-	5.0e-29	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	At4g02570; CUL1; CUL1-C; CUL1-G; GSVIVT00019763001; GSVIVT00023565001; MICPUCDRAFT_45869; MICPUN_106836; OJ1504_G04.11; OSJNBa0010P20.16; Os01g0369000; Os05g0149600; OsI_01951; OsI_18469; OsJ_01786; OsJ_17132; P0043B10.31; P0560B06.30; PHYPADRAFT_107536;

Source	GOs	Term	Type	Identity
Sma3	condensed nuclear chromosome	GO:0000794	Cellular Component	-
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	cullin-RING ubiquitin ligase complex	GO:0031461	Cellular Component	-
Sma3	ubiquitin protein ligase binding	GO:0031625	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	SCF complex assembly	GO:0010265	Biological Process	-
Sma3	regulation of circadian rhythm	GO:0042752	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02570.1	ATCUL1, CUL1, AXR6 cullin 1 chr4:1129315-1133435 FORWARD LENGTH=738	5.0e-29	52%
RefSeq	Arabidopsis thaliana	NP_001190661.1	cullin 1 [Arabidopsis thaliana]	6.0e-29	52%
RefSeq	Populus trichocarpa	XP_002330364.1	predicted protein [Populus trichocarpa]	1.0e-31	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQB2

Fln msg: Distance to subject end: 340 aas, your sequence is shorter than subject: 101 - 744

Fln protein: LFCRIRKGLEPLAQVFKQYVTDEVTSLVKHAEDAANNEKEFLGEVLKLCCKRLQYVNECFMDHSLFHKALKEAFGVFCNKEVTGKRIAELLVTFFDNILKK

Protein Length: 102

Fln nts: GTTGTTTTGTAGGATACGTAAAGGCTTGGAACCTTTGGCTCAAGTTTTCAAACAGTACGTTACTGATGAGGTTACATCATTAGTCAAGCACGCGGAAGATGCAGCAAACAATGAAAAGGAGTTTCTAGGGGAAGTTCTTAAATTGTGTTGCAAGCGCTTGCAATATGTCAATGAGTGTTTTATGGACCATTCCCTTTTCCACAAGGCACTGAAGGAAGCATTTGGGGTATTTTGTAACAAGGAAGTTACAGGAAAAAGGATTGCAGAATTATTGGTTACATTTTTTGACAACATCTTGAAAAAG

Fln Alignment:

CL18904Contig1___LFCRIRKGLEPLAQVFKQYVTDEVTSLVKHAEDAANNEKE------------FLGEVLKLCCKRLQYVNECFMDHSLFHKALKEAFGVFCNKEVTGKRIAELLVTFFDNILKK
B8LQB2_______________LFYRIPKGLEPVSLIFKQHVTGEGTSLVKHAEDAASNKKAEKKDVVGAQEQAFVRKVIELHDKYLQYVNECFMNHSLFHKALKEAFEVFCNKGVAGSTSAELLATFCDNILKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain