SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49140

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene49140
CTAAGCATACTTCTAGTCTTTGTTCTCCACTGGGGAGTTCCAGGAGTTGCAGCAGCTGCAGTACTCACTAATCTCAACATGGTGTTTCTGTTGGTTGGGTATCTCTACTTATCTGGAGTGTACAAGAGGACCTGGAAGGGCTGGTCAGTTGTTGCACTGCGGGAATGGTGGACTCTGCTCAAACTAGCTCTGCCAAGCTGTGTTGGCATTTGTCTAGAATGGTGGTGGTATGA

Ace file of the UniGene sp_v3.0_unigene49140

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	58%

Source	Gene names
Sma3	GSVIVT00007400001; LOC_Os03g62270; OSIGBa0127A14.5; OSJNBa0042I09.8; OSJNBa0088I22.5; Os03g0839200; Os04g0571600; OsI_14245; OsI_17039; OsJ_15838; PHYPADRAFT_13859; PHYPADRAFT_179266; PHYPADRAFT_215890; PHYPADRAFT_60121;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Histone H4	IPR001951	-	0.0	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G58340.1	ZF14 MATE efflux family protein chr1:21653162-21655117 FORWARD LENGTH=532	4.0e-17	51%
RefSeq	Arabidopsis thaliana	NP_564731.1	MATE efflux family protein [Arabidopsis thaliana]	5.0e-17	51%
RefSeq	Populus trichocarpa	XP_002318258.1	predicted protein, partial [Populus trichocarpa]	6.0e-18	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RXX2

Fln msg: Distance to subject end: 261 aas, your sequence is shorter than subject: 77 - 520

Fln protein: LSILLVFVLHWGVPGVAAAAVLTNLNMVFLLVGYLYLSGVYKRTWKGWSVVALREWWTLLKLALPSCVGICLEWWWY

Protein Length: 78

Fln nts: CTAAGCATACTTCTAGTCTTTGTTCTCCACTGGGGAGTTCCAGGAGTTGCAGCAGCTGCAGTACTCACTAATCTCAACATGGTGTTTCTGTTGGTTGGGTATCTCTACTTATCTGGAGTGTACAAGAGGACCTGGAAGGGCTGGTCAGTTGTTGCACTGCGGGAATGGTGGACTCTGCTCAAACTAGCTCTGCCAAGCTGTGTTGGCATTTGTCTAGAATGGTGGTGGTATGA

Fln Alignment:

CL18292Contig1___LSILLVFVLHWGVPGVAAAAVLTNLNMVFXXXXXXXXXXXXKRTWKGWSVVALREWWTLLKLALPSCVGICLEWWWY
A9RXX2_______________LSIVFTFVFHLGVPGVAIAASMTNINVVVFMLLYVKFSGAFKNTWGGVSPACVREWWPVLSLALPSCLQICLEWWWY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain