SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49084

Length: 260 nt

UniGene Fasta

>sp_v3.0_unigene49084
GACTGTCCAATCGAAGAGGGTAAAGATGCACCGCAAGCTCGCGCTAGTACTGGAAGACGAGTTGGGAAGGCGAGGAGCCGCATGCGTAATTGCGGAGGAAATGTTTGGCAAATGGAAGGGCTTGCAAGAGACAGCTATCGATCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCATAATACACTCCTTGAACAAGATGAAAATGAAAAGTGGATTGGAATGGGAAATAAAGAATTAATGGAGTATTTTAAAGGATATA

Ace file of the UniGene sp_v3.0_unigene49084

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rgd1, SGS3, lbl1; ragged seedling1	-	-	2.0e-24	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Protein SUPPRESSOR OF GENE SILENCING 3	-	-	1.656e-09	-

Source	Gene names
Sma3	At5g23570; GSVIVT00003647001; LBL1; LOC_Os12g09590; MQM1.17; Os12g0197700; OsI_036510; OsI_37773; OsJ_35526; PHYPADRAFT_88422; POPTRDRAFT_779908; RCOM_1176800; SGS1501; SGS3; VITISV_043511;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	virus induced gene silencing	GO:0009616	Biological Process	-
Sma3	vegetative phase change	GO:0010050	Biological Process	-
Sma3	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	-
Sma3	gene silencing by RNA	GO:0031047	Biological Process	-
Sma3	regulation of defense response to virus	GO:0050688	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	XS domain	IPR005380	-	-
Sma3	Zinc finger-XS domain	IPR005381	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G23570.1	SGS3, ATSGS3 XS domain-containing protein / XS zinc finger domain-containing protein-related chr5:7943621-7945874 FORWARD LENGTH=625	7.0e-29	58%
RefSeq	Arabidopsis thaliana	NP_197747.1	protein SUPPRESSOR OF GENE SILENCING 3 [Arabidopsis thaliana]	9.0e-29	58%
RefSeq	Populus trichocarpa	XP_002325710.1	predicted protein, partial [Populus trichocarpa]	7.0e-24	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNA2

Fln msg: Distance to subject end: 210 aas, your sequence is shorter than subject: 86 - 419

Fln protein: TVQSKRVKMHRKLALVLEDELGRRGAACVIAEEMFGKWKGLQETAIDQEIVWPPMVIIHNTLLEQDENEKWIGMGNKELMEYFKGY

Protein Length: 87

Fln nts: GACTGTCCAATCGAAGAGGGTAAAGATGCACCGCAAGCTCGCGCTAGTACTGGAAGACGAGTTGGGAAGGCGAGGAGCCGCATGCGTAATTGCGGAGGAAATGTTTGGCAAATGGAAGGGCTTGCAAGAGACAGCTATCGATCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCATAATACACTCCTTGAACAAGATGAAAATGAAAAGTGGATTGGAATGGGAAATAAAGAATTAATGGAGTATTTTAAAGGATATA

Fln Alignment:

CL17613Contig1___VKMHRKLALVLEDELGRRGAACVIAEEMFGKWKGLQETAIDQEIVWPPMVIIHNTLLEQDENEKWIGMGNKELMEYFKGY
B8LNA2_______________VRLHRKLVKVLEEELKRRSAAGFAVQEVYGKWLSLQEGHIDSQIVWPPIVIVENTGFKLQDNQQSSGMGNKELLEAFKAY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain