SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49047

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene49047
CTTCAGGAGCAGAGGGTTACTGAGGATGCACGCAGAATGGCAGAGCAGGATGCAGCTGCACAAAGACATTTTGCCGCTGTGCTTCAGGATAAGTATGAAGAAGCAATAAATTCACTTTCTGCAATGGAAAAGAGGGCTGTCATGGCAGAAAGCATGTTAGAAGCTACCTTGCTGTGTGAATCTAACCAACCTGCATTAAAAAAGGCCCCCGATTCTCGATCAGTACGAGAAGAGTTGTC

Ace file of the UniGene sp_v3.0_unigene49047

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gb\|AEE79329.1\| RabGAP/TBC domain-containing protein [Arabidopsis thaliana]	-	-	1.0e-16	61%
FL-Next	tr=Predicted protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	68%
Sma3	Run and tbc1 domain containing 3, plant, putative	-	-	7.852e-10	-

Source	Gene names
Sma3	GSVIVT00023082001; GSVIVT00029489001; OSJNBa0009E21.5; Os01g0835000; Os05g0465100; OsI_04332; OsI_20262; OsJ_03987; OsJ_18844; P0506B12.13; POPTRDRAFT_227764; POPTRDRAFT_874826; POPTRDRAFT_916074; RCOM_0744140; RCOM_0819920; T15C9_20;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	Rab GTPase activator activity	GO:0005097	Molecular Function	-
Sma3	regulation of Rab GTPase activity	GO:0032313	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Rab-GTPase-TBC domain	IPR000195	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39280.2	Ypt/Rab-GAP domain of gyp1p superfamily protein chr2:16402001-16406650 REVERSE LENGTH=772	2.0e-22	61%
RefSeq	Arabidopsis thaliana	NP_181460.3	RabGAP/TBC domain-containing protein [Arabidopsis thaliana]	2.0e-22	61%
RefSeq	Populus trichocarpa	XP_002312052.1	predicted protein [Populus trichocarpa]	4.0e-21	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7LN73

Fln msg: Distance to subject end: 26 aas, your sequence is shorter than subject: 79 - 752

Fln protein: LQEQRVTEDARRMAEQDAAAQRHFAAVLQDKYEEAINSLSAMEKRAVMAESMLEATLLCESNQPALKKAPDSRSVREEL

Protein Length: 80

Fln nts: CTTCAGGAGCAGAGGGTTACTGAGGATGCACGCAGAATGGCAGAGCAGGATGCAGCTGCACAAAGACATTTTGCCGCTGTGCTTCAGGATAAGTATGAAGAAGCAATAAATTCACTTTCTGCAATGGAAAAGAGGGCTGTCATGGCAGAAAGCATGTTAGAAGCTACCTTGCTGTGTGAATCTAACCAACCTGCATTAAAAAAGGCCCCCGATTCTCGATCAGTACGAGAAGAGTTGTC

Fln Alignment:

CL17180Contig1___QEQRVTEDARRMAEQDAAAQRHFAAVLQDKYEEAINSLSAMEKRAVMAESMLEATLLCESNQPALKKAPDSRSVRE
D7LN73_______________QEHKVTEDARRLAEQDAAAQRHAAEVLQEKYEEAVAALDEMEKRAVMAESMLEATLQYQSGQ--VKAQPSPRSVSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain