SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49016

Length: 193 nt

UniGene Fasta

>sp_v3.0_unigene49016
GTATTATCCGAATGGTCGCTATTATTCACTTTCATATGATGATGACAGTACAATTGATATCGAAGCTTGCCCTATATGTGGGAATGCAAGGCTTGTTTATGACTGCACCACTGAAAGTTGCCAAAAGCAAAAAGACCAGACAGTTAGAGAGTGTCGGGCTTGTACATTTTGTATTGCACGTTGTGACGAGTGT

Ace file of the UniGene sp_v3.0_unigene49016

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%

Source	Gene names
Sma3	GSVIVT00020573001; POPTRDRAFT_549629; RCOM_1081340;

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G26000.1	Ribonuclease inhibitor chr3:9507042-9508542 REVERSE LENGTH=453	2.0e-14	54%
RefSeq	Arabidopsis thaliana	NP_566787.1	F-box protein SKIP14 [Arabidopsis thaliana]	2.0e-14	54%
RefSeq	Populus trichocarpa	XP_002315636.1	predicted protein [Populus trichocarpa]	1.0e-16	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACA5

Fln msg: Distance to subject end: 73 aas, your sequence is shorter than subject: 64 - 189

Fln protein: YYPNGRYYSLSYDDDSTIDIEACPICGNARLVYDCTTESCQKQKDQTVRECRACTFCIARCDEC

Protein Length: 65

Fln nts: GTATTATCCGAATGGTCGCTATTATTCACTTTCATATGATGATGACAGTACAATTGATATCGAAGCTTGCCCTATATGTGGGAATGCAAGGCTTGTTTATGACTGCACCACTGAAAGTTGCCAAAAGCAAAAAGACCAGACAGTTAGAGAGTGTCGGGCTTGTACATTTTGTATTGCACGTTGTGACGAGTGT

Fln Alignment:

CL16949Contig1___YYPNGRYYSLSYDDDSTIDIEACPICGNARLVYDCTTESCQKQKDQTVRECRACTFCIARCDEC
D5ACA5_______________FYHNG-HYMFSYHDDRSIDVEVCPKCENARLVYDCPRERCQKKKGHKLQQCRGCIFCIARCEEC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain