SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48983

Length: 138 nt

UniGene Fasta

>sp_v3.0_unigene48983
GTCATGCTCTGTCCATCGCTGCAGCTACTATAGATGAGGATTCTTCAGTTTTCTTCATCCTTTTCCTGTTGAGAGCTGCTGGGTTTCTTCTTCCCTGCTATATAATGGCTCGAGCAATGAATATTCTTCAGCTTAGAC

Ace file of the UniGene sp_v3.0_unigene48983

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] dbj\|BAB11496.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL31206.1\| AT5g62460/K19B1_7 [Arabidopsis thaliana] gb\|AAM98316.1\| At5g62460/K19B1_7 [Arabidopsis thaliana] gb\|AED97609.	-	-	1.0e-06	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Membrane associated ring finger 1,8, putative	-	-	1.097e-08	-

Source	Gene names
Sma3	At3g47550; F1P2.100; GSVIVT00016333001; GSVIVT00036958001; LOC_Os11g38800; Os11g0600700; OsI_36665; OsJ_34434; POPTRDRAFT_720776; POPTRDRAFT_724181; RCOM_0836410; RCOM_1472160; VITISV_040117;

Source	GOs	Term	Type	e value	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-CH-type	IPR011016	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G62460.1	RING/FYVE/PHD zinc finger superfamily protein chr5:25075545-25077072 FORWARD LENGTH=307	7.0e-11	60%
RefSeq	Arabidopsis thaliana	NP_568953.1	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]	9.0e-11	60%
RefSeq	Populus trichocarpa	XP_002312245.1	predicted protein [Populus trichocarpa]	3.0e-13	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQD2

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 45 - 279

Fln protein: HALSIAAATIDEDSSVFFILFLLRAAGFLLPCYIMARAMNILQLR

Protein Length: 46

Fln nts: GTCATGCTCTGTCCATCGCTGCAGCTACTATAGATGAGGATTCTTCAGTTTTCTTCATCCTTTTCCTGTTGAGAGCTGCTGGGTTTCTTCTTCCCTGCTATATAATGGCTCGAGCAATGAATATTCTTCAGCTTAGAC

Fln Alignment:

CL16649Contig1___HALSIAAATIDEDSSVFFILFLLRAAGFLLPCYIMARAMNILQLR
B8LQD2_______________HALAIASAGGDEDVSTFFTL-LLRTAGFLLPCYIMARAMNILQHR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain