SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48867

Length: 483 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene48867
CTGCTGGTCTGTAGACAACTATCTCGCACACACAAACCCACGCGGCGCAATGGCGAATGCAGAGGGAGGACGCAAATAATAGGAGGCAGGGGAGTGGTTTTAAAGAAAGCGAATTGGAAAACTGGGTAGCGAGAGGGATCGGAGATTTTGGATCACAATGCAGGTTCCGGGCTTTCTCGCTCTGGGAGGTCGCAGGATTCGGCAGATCCAGAGGGCAATGCAAAATGCCAAGGTCACGCTGCTGTGCCTGTTCGTGACGGTGTTGGTTTTGAGAGGCACAATCGGTGCTGGGAAGGTTGGGACGCCTGAGCAAGATTTTTATGAGATTCGTGAGCATCTTCCCCCCATTGTGATTTTGGGAATAAATCTGTGTTAGAAATGCTTTGAACATACCCATGGAAGCACAGGGANTGTAAAGCATGTGTATGTTTTGTACTAGGGTTCCATTCAAGCCTTACCCCCATTGTGATTTTGGGAATAAAT

Ace file of the UniGene sp_v3.0_unigene48867 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-1,6-xylosyltransferase n=2 Tax=Pinaceae RepID=Q5TIN4_PINTA	-	-	1.0e-16	77%
FL-Next	tr=Alpha-1,6-xylosyltransferase; Pinus taeda (Loblolly pine).	-	-	0.0	96%
Sma3	Alpha-1,6-xylosyltransferase	-	-	2.593e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan 6-xylosyltransferase.	EC:2.4.2.39	-	5.446e-08	-

Source	Gene names
Sma3	AT3G62720; At3g62720; At4g02500; F26K9_150; GSVIVT00019781001; GSVIVT00027970001; GT2; GTL5; PHYPADRAFT_204044; POPTRDRAFT_565718; POPTRDRAFT_584205; RCOM_0681050; T10P11.20; T14P8.23; VITISV_017033; VITISV_027412; XT1; XT1b; x34.1;

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	xyloglucan 6-xylosyltransferase activity	GO:0033843	Molecular Function	-
Sma3	UDP-xylosyltransferase activity	GO:0035252	Molecular Function	-
Sma3	xyloglucan biosynthetic process	GO:0009969	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Galactosyl transferase	IPR008630	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5TIN4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 335 aas, your sequence is shorter than subject: 73 - 444

Fln protein: MQVPGFLALGGRRIRQIQRAMQNAKVTLLCLFVTVLVLRGTIGAGKVGTPEQDFYEIREHLPPIVILGINLC*

Protein Length: 74

Fln nts: CTGCTGGTCTGTAGACAACTATCTCGCACACACAAACCCACGCGGCGCAATGGCGAATGCAGAGGGAGGACGCAAATAATAGGAGGCAGGGGAGTGGTTTTAAAGAAAGCGAATTGGAAAACTGGGTAGCGAGAGGGATCGGAGATTTTGGATCACA_-_ATGCAGGTTCCGGGCTTTCTCGCTCTGGGAGGTCGCAGGATTCGGCAGATCCAGAGGGCAATGCAAAATGCCAAGGTCACGCTGCTGTGCCTGTTCGTGACGGTGTTGGTTTTGAGAGGCACAATCGGTGCTGGGAAGGTTGGGACGCCTGAGCAAGATTTTTATGAGATTCGTGAGCATCTTCCCCCCATTGTGATTTTGGGAATAAATCTGTGTTAGAAATGCTTTGAACATACCCATGGAAGCACAGGGAtTGTAAAGCATGTGTATGTTTTGTACTAGGGTTCCATTCAAGCCTTACCCCCATTGTGATTTTGGGAATAAAT

Fln Alignment:

CL15521Contig1___MQVPGFLALGGRRIRQIQRAMQNAKXXXXXXXXXXXXLRGTIGAGKVGTPEQDFYEIREHL
Q5TIN4_______________MQVPGFLALGGRRIRQIQRAMQNAKVTLLCLFVTVLVLRGTIGAGKFGTPEQDFNEIREHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain