SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48631

Length: 145 nt

UniGene Fasta

>sp_v3.0_unigene48631
GAGCTTTACATTCCACCTGGGAGATGGTTGACGGGGAGTTTCAATCTCACAAATCACTTCACTCTTTATCTTGATAAAGAGGCTGTCATTCTGGGCTCTCAGGATTTTAATGAGTGGCCATTGATCCCACCTTTGCCTTCCTATG

Ace file of the UniGene sp_v3.0_unigene48631

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RCG6_RICCO	-	-	3.0e-16	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Polygalacturonase, putative	-	-	2.086e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polygalacturonase.	EC:3.2.1.15	-	3.704e-12	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	3.704e-12	%
Sma3	Starch and sucrose metabolism	00500	3.704e-12	%
Sma3	Metabolic pathways	01100	3.704e-12	%

Source	Gene names
Sma3	8F2.19; AT4g23820; At2g23900; At3g48950; At4g23820; At4g23820/F9D16.290; At5g49215; F9D16.290; GSVIVT00002554001; GSVIVT00016404001; GSVIVT00026920001; GSVIVT00028234001; GSVIVT00033059001; GSVIVT00034796001; GSVIVT00037720001; GSVIVT00037721001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48950.1	Pectin lyase-like superfamily protein chr3:18148017-18149987 FORWARD LENGTH=469	1.0e-18	66%
RefSeq	Arabidopsis thaliana	NP_190464.1	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]	2.0e-18	66%
RefSeq	Populus trichocarpa	XP_002303605.1	predicted protein [Populus trichocarpa]	5.0e-21	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg: Distance to subject end: 343 aas, your sequence is shorter than subject: 48 - 472

Fln protein: ELYIPPGRWLTGSFNLTNHFTLYLDKEAVILGSQDFNEWPLIPPLPSY

Protein Length: 49

Fln nts: GAGCTTTACATTCCACCTGGGAGATGGTTGACGGGGAGTTTCAATCTCACAAATCACTTCACTCTTTATCTTGATAAAGAGGCTGTCATTCTGGGCTCTCAGGATTTTAATGAGTGGCCATTGATCCCACCTTTGCCTTCCTATG

Fln Alignment:

CL12791Contig1___ELYIPPGRWLTGSFNLTNHFTLYLDKEAVILGSQDFNEWPLIPPLPSY
B8LQW0_______________QLYIPPGRWLTGSFNLTDHFTLYLHKEAVILGSQDLEDWPLIPPLPSY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain