SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48453

Length: 238 nt

UniGene Fasta

>sp_v3.0_unigene48453
CGCTAGCCTGCACTGGCTCTCTCGAGTTCCTGCTGACGTTGAGGACAGAAATTCTGTTGCTTGGAACGAGGGTCATGTCTATATATCCAGTGATATAGTGGCCGATGCCTATCTCAACCAATTCAGACAAGACTTGGCATCATTTTTAGGAGCCCGAGCACAGGAAATTGTTCCCGGAGGATGCATGTTCATAGCGCTCCTGGCTCGTAATTCTGGCGACATAAAGCAACAAGGCGGG

Ace file of the UniGene sp_v3.0_unigene48453

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Benzoate carboxyl methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SYY5_RICCO	-	-	3.0e-14	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%

Source	Gene names
Sma3	H1005F08.6; IAMT1; OSJNBa0087O24.5; Os04g0665200; OsI_17812; OsJ_10303; RCOM_0546890;

Source	GOs	Term	Type	e value	Identity
Sma3	methyltransferase activity	GO:0008168	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55250.1	IAMT1 IAA carboxylmethyltransferase 1 chr5:22407589-22410854 REVERSE LENGTH=386	3.0e-18	51%
RefSeq	Arabidopsis thaliana	NP_001078756.1	IAA carboxylmethyltransferase 1 [Arabidopsis thaliana]	3.0e-18	51%
RefSeq	Populus trichocarpa	XP_002298843.1	S-adenosyl-L-methionine:carboxyl methyltransferase family protein [Populus trichocarpa]	5.0e-19	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQW8

Fln msg: Distance to subject end: 138 aas, your sequence is shorter than subject: 79 - 394

Fln protein: ASLHWLSRVPADVEDRNSVAWNEGHVYISSDIVADAYLNQFRQDLASFLGARAQEIVPGGCMFIALLARNSGDIKQQGG

Protein Length: 80

Fln nts: CGCTAGCCTGCACTGGCTCTCTCGAGTTCCTGCTGACGTTGAGGACAGAAATTCTGTTGCTTGGAACGAGGGTCATGTCTATATATCCAGTGATATAGTGGCCGATGCCTATCTCAACCAATTCAGACAAGACTTGGCATCATTTTTAGGAGCCCGAGCACAGGAAATTGTTCCCGGAGGATGCATGTTCATAGCGCTCCTGGCTCGTAATTCTGGCGACATAAAGCAACAAGGCGGG

Fln Alignment:

CL10007Contig1___SLHWLSRVPADVEDRNSVAWNEGHVYISSDIVADAYLNQFRQDLASFLGARAQEIVPGGCMFIALLARNSGDIKQQGG
A9NQW8_______________SLHWLSQVPASIEDRSSAAWNGGHVYISSDAVADAYLNQFKQDFAAFLDARAEEIIPGGCMFTALLGRNSADVKEQSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain