SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48393

Length: 231 nt

UniGene Fasta

>sp_v3.0_unigene48393
CTTTTATTCTCGCTGATTAGAGGGTTTGAGTCATTCGCCCAGAGACAATTGTATCTTGGAGCCCAGCAGCTTGGGATGCGGGTTAGATCAGGCCTCACAATTCTTGTATACAGAAAGGGCTTGCGTCTGTCTAACATATCTAGACAGAAGCATACTGTTGGTGAAATCATAAATTATATGAGTGTGGATGTGGAAGCATTGGAGCTTTTGCCTGGTACATGCATGATATCT

Ace file of the UniGene sp_v3.0_unigene48393

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, subfamily C, member 9, group MRP protein PpABCC9 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TG36_PHYPA	-	-	2.0e-14	61%
FL-Next	sp=ABC transporter C family member 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%

Source	Gene names
Sma3	At3g60160; GSVIVT00028494001; LOC_Os03g04920; MRP9; Os03g0142800; OsI_09965; OsI_17163; OsJ_09363; OsJ_15949; PHYPADRAFT_221970; POPTRDRAFT_775292; RCOM_0541580; T2O9.140; lpa1; mrp6; ppabcc9;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04120.1	ATMRP5, MRP5, ATABCC5, ABCC5 multidrug resistance-associated protein 5 chr1:1064848-1070396 REVERSE LENGTH=1514	1.0e-16	53%
RefSeq	Arabidopsis thaliana	NP_001184906.1	ABC transporter C family member 5 [Arabidopsis thaliana]	2.0e-16	53%
RefSeq	Populus trichocarpa	XP_002321297.1	multidrug resistance protein ABC transporter family [Populus trichocarpa]	8.0e-16	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7GB25

Fln msg: Distance to subject end: 1088 aas, your sequence is shorter than subject: 77 - 1514

Fln protein: LLFSLIRGFESFAQRQLYLGAQQLGMRVRSGLTILVYRKGLRLSNISRQKHTVGEIINYMSVDVEALELLPGTCMIS

Protein Length: 78

Fln nts: CTTTTATTCTCGCTGATTAGAGGGTTTGAGTCATTCGCCCAGAGACAATTGTATCTTGGAGCCCAGCAGCTTGGGATGCGGGTTAGATCAGGCCTCACAATTCTTGTATACAGAAAGGGCTTGCGTCTGTCTAACATATCTAGACAGAAGCATACTGTTGGTGAAATCATAAATTATATGAGTGTGGATGTGGAAGCATTGGAGCTTTTGCCTGGTACATGCATGATATCT

Fln Alignment:

CL9455Contig1___LFSLIRGFESFAQRQLYLGAQQLGMRVRSGLTILVYRKGLRLSNISRQKHTVGEIINYMSVDVEAL
Q7GB25_______________IFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain