SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48368

Length: 379 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene48368
ATGATCATTGGGGCTTCAGGATCCATCCCTCCTTTAGTCGATCTACTTCAGGATGGAACTGTGAGAGGGAAAAAGGATGTTGCTACTGCTATTTTTAATTTATCAATTTATCAAGGGAGCAAATTTAGAGCTGTTAGGGCTAGAGTTGTTCCTCCTCTAATAGCGTTGCTTGTTGACCATAGCATTGGAATGGTTGATGAAGCTCTTGCTATTCTTGCAGTACTTGCTACTCATTAGGAGGGTCAGATTGCCATTGGCCAACAATTTGTTATTGATATCATTGTTGAATTGTACCATTCAGGTTCAGCACGTAACAAGGAGAATGTTGTTGTTGTATTGCTGGCTTTGGGTATGAATGGTTCATCTCATTTGTTGGTAG

Ace file of the UniGene sp_v3.0_unigene48368 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-protein ligase, PUB13 n=2 Tax=Selaginella moellendorffii RepID=D8SNN8_SELML	-	-	5.0e-37	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	E3 ubiquitin ligase PUB14, putative	-	-	2.609e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	9.747e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		9.747e-14	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		9.747e-14	%

Source	Gene names
Sma3	At1g23030; At1g71020; At2g23140; At2g28830; At3g46510; At3g54850; At5g42340; At5g67340; B1065E10.53; F10G19.3; F12A12.30; F15H11.22; F23N20.1; F28P10.170; F8N16.12; GSVIVT00014430001; GSVIVT00018150001; GSVIVT00019617001; GSVIVT00024348001; GSVIVT00028576

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G42340.1	PUB15 Plant U-Box 15 chr5:16928086-16930367 REVERSE LENGTH=660	3.0e-35	55%
RefSeq	Arabidopsis thaliana	NP_199049.2	U-box domain-containing protein 15 [Arabidopsis thaliana]	4.0e-35	55%
RefSeq	Populus trichocarpa	XP_002311996.1	predicted protein [Populus trichocarpa]	8.99999e-40	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 126 - 497

Fln protein: MIIGASGSIPPLVDLLQDGTVRGKKDVATAIFNLSIYQGSKFRAVRARVVPPLIALLVDHSIGMVDEALAILAVLATH*EGQIAIGQQFVIDIIVELYHSGSARNKENVVVVLLALGMNGSSHLLV

Protein Length: 127

Fln nts: ATGATCATTGGGGCTTCAGGATCCATCCCTCCTTTAGTCGATCTACTTCAGGATGGAACTGTGAGAGGGAAAAAGGATGTTGCTACTGCTATTTTTAATTTATCAATTTATCAAGGGAGCAAATTTAGAGCTGTTAGGGCTAGAGTTGTTCCTCCTCTAATAGCGTTGCTTGTTGACCATAGCATTGGAATGGTTGATGAAGCTCTTGCTATTCTTGCAGTACTTGCTACTCATTAGGAGGGTCAGATTGCCATTGGCCAACAATTTGTTATTGATATCATTGTTGAATTGTACCATTCAGGTTCAGCACGTAACAAGGAGAATGTTGTTGTTGTATTGCTGGCTTTGGGTATGAATGGTTCATCTCATTTGTTGGTAG

Fln Alignment:

CL9184Contig1___MIIGASGSIPPLVDLLQDGTVRGKKDVATAIFNLSIYQGSKFRAVRARVVPPLIALLVDHSIGMVDEALAILAVLATH*EGQIAIGQQFVIDIIVELYHSGSARNKENVVVVLLALGMNGSSHLL
C0PSB5_______________VIIGASGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNKFRAVRAGVVPPLIALLVDQSIGMVDEALAILAILATHQEGRIAIGQQSAIDILVELIHSGSARNKENAAAVLLALGMNDSSHLL

SSRs (tot: 1)

Start position	End position	Sequence	Length
45	56	ACA ACA ACA ACA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain