SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48355

Length: 218 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene48355
CAAACTTGGTGATTTACCTCACAGATGTTAAGCACGAGAGCACTGCTGCTGCTGCAAAGAATGTGAATGTCTGGAATGGTGTGGCATCCATGCTTCCTTTCGTTGGAGCTTTTGTTGCAGATTCATATTTGGGTAGATATTGGACCATTACCCTGTCTTCTGTCGTATATTTGATGGGATTAATTTTGGTCACTTTATCGGCCTCTTTGAGAAGTTTG

Ace file of the UniGene sp_v3.0_unigene48355 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter n=1 Tax=Hakea actites RepID=A6YJX5_9MAGN	-	-	3.0e-18	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Chromosome chr18 scaffold_122, whole genome shotgun sequence	-	-	5.643e-33	-

Source	Gene names
Sma3	At1g22540; At1g22550; At1g22570; At1g72120; F12K8.11; F12K8.8; F28P5.2; F5K20_260; GSVIVT00001822001; GSVIVT00001823001; GSVIVT00001825001; GSVIVT00001827001; GSVIVT00001828001; GSVIVT00001830001; GSVIVT00001831001; GSVIVT00001832001; GSVIVT00001835001; G

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22570.1	Major facilitator superfamily protein chr1:7976620-7978573 REVERSE LENGTH=565	6.0e-22	62%
RefSeq	Arabidopsis thaliana	NP_173672.1	putative peptide/nitrate transporter [Arabidopsis thaliana]	8.0e-22	62%
RefSeq	Populus trichocarpa	XP_002327274.1	predicted protein [Populus trichocarpa]	2.0e-21	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ03

Fln msg: Distance to subject end: 446 aas, your sequence is shorter than subject: 72 - 573

Fln protein: NLVIYLTDVKHESTAAAAKNVNVWNGVASMLPFVGAFVADSYLGRYWTITLSSVVYLMGLILVTLSASLRSL

Protein Length: 73

Fln nts: CAAACTTGGTGATTTACCTCACAGATGTTAAGCACGAGAGCACTGCTGCTGCTGCAAAGAATGTGAATGTCTGGAATGGTGTGGCATCCATGCTTCCTTTCGTTGGAGCTTTTGTTGCAGATTCATATTTGGGTAGATATTGGACCATTACCCTGTCTTCTGTCGTATATTTGATGGGATTAATTTTGGTCACTTTATCGGCCTCTTTGAGAAGTTTG

Fln Alignment:

CL9061Contig1___NLVIYLTDVKHESTAAAAKNVNVWNGVASMLPFVGAFVADSYLGRYWTITLSSVVYLMGLILVTLSASLRSL
B8LQ03_______________NLVIYLTDVMGESTATAAKNVNVWSGVATMLPFVGAFVADSYLGRFWTIALSSVVYLLGLILVTLSASLRSL

SSRs (tot: 1)

Start position	End position	Sequence	Length
164	176	GCA GCA GCA GCA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain