SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48324

Length: 455 nt

UniGene Fasta

>sp_v3.0_unigene48324
ATTCTTTTCTATTGCCCACCGATCGTTTCAAATGTAAGGATATGAGTGAATACGAGATCTTCATGGAATCACTTATATGTAGGATTGATTCCAATTGTGAGAGGTTGCTAACTTTTGATACTGAGGCTGCTGGCAATAGAGGAGGTATTACAGATATTGGAATTGCAGTGGATCATGTCAAGCATCCAAAAAGAACTATAAGCTCTTGCACAACAGGGAAATCCCCTTTTCCAGCTCTTGATGCTTTTGTGGAATCTGTTGCTTCTGTAGGAAATGTTCCAGGGCATATTCGAAGCTGGTATTGGTTTTCAGAACATGGTGTGATAGTATACAACATCTCTGGAAATCGGTTTTGTGAAATCATTGGCAGGCAGCATAAGAGCAATCATGTGATGTATATCGTGGATTTCCGAACAGCATGTTACTATCAGAAGTGTTACGATCCTGACTGCAGA

Ace file of the UniGene sp_v3.0_unigene48324

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA primase [Arabidopsis thaliana] gb\|AED96261.1\| DNA primase [Arabidopsis thaliana]	-	-	9.0e-32	52%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	0.0	53%

Source	Gene names
Sma3	At5g52800; GSVIVT00037753001; OSTLU_25104; Os07g0467900; OsI_25931; P0003B09.27; RCOM_1582000;

Source	GOs	Term	Type	e value	Identity
Sma3	DNA primase activity	GO:0003896	Molecular Function	0.0	-
Sma3	DNA replication	GO:0006260	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA primase, UL52/UL70 type, Herpesviridae	IPR004340	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G52800.3	DNA primases chr5:21396053-21399419 FORWARD LENGTH=614	0.0	56%
RefSeq	Arabidopsis thaliana	NP_001154775.1	DNA primase [Arabidopsis thaliana]	0.0	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F2D9R6

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 151 - 603

Fln protein: SFLLPTDRFKCKDMSEYEIFMESLICRIDSNCERLLTFDTEAAGNRGGITDIGIAVDHVKHPKRTISSCTTGKSPFPALDAFVESVASVGNVPGHIRSWYWFSEHGVIVYNISGNRFCEIIGRQHKSNHVMYIVDFRTACYYQKCYDPDCR

Protein Length: 152

Fln nts: ATTCTTTTCTATTGCCCACCGATCGTTTCAAATGTAAGGATATGAGTGAATACGAGATCTTCATGGAATCACTTATATGTAGGATTGATTCCAATTGTGAGAGGTTGCTAACTTTTGATACTGAGGCTGCTGGCAATAGAGGAGGTATTACAGATATTGGAATTGCAGTGGATCATGTCAAGCATCCAAAAAGAACTATAAGCTCTTGCACAACAGGGAAATCCCCTTTTCCAGCTCTTGATGCTTTTGTGGAATCTGTTGCTTCTGTAGGAAATGTTCCAGGGCATATTCGAAGCTGGTATTGGTTTTCAGAACATGGTGTGATAGTATACAACATCTCTGGAAATCGGTTTTGTGAAATCATTGGCAGGCAGCATAAGAGCAATCATGTGATGTATATCGTGGATTTCCGAACAGCATGTTACTATCAGAAGTGTTACGATCCTGACTGCAGA

Fln Alignment:

CL8707Contig1___SFLLPTDRFKCKDMSEYEIFMESLICRIDSNCERLLT------------FDTEAAGNRGGITDIGIAVDHVKHPKRTISSCTTGKSPFPALDAFVESVASVGNVPGHIRSWYWFSEHGVIVYNISGNRFCEIIGRQHKSNHVMYIVDFRTACYYQKCYDPDC
F2D9R6_______________SFLVATGRFKCKNMNDKELFMESLICRLDDDCDKLLICKLDLECKKVLHFDTEASITRIQGKNYRVAIDTYRNDFP--QAYTYGRSPFPALDGFIESIASFGSVSGKIRCWYWFSQDGLMIYSMSRSRYCEHIGREHKSNHVMYIVDFQRAAYYQKCYDPDC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain