SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48314

Length: 301 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene48314
ATGGCATGCGGCTTTTGACAGTGAGGGCAGGCCAGTGGGGTTCCAGAAGGCTCTCAAGACAATTATTTTTGGGGGTGTGGATGCATCTATAAGGGCAGAAGTTTGGGAATATTTGCTTGGTTGTTATGCACTTAGCAGCACTACAGAGAATCGGCAGCAGTTAAGGATATCTCGAAGGAAGAGATATAGAGATTTGATTGTCCAATGTCAAATGATGCACTCTAGCATTGGTACTGGTTCACTTGCTTACACTGTTGGGTCTAAAGTAATGGATGTGCGGATAATGTCTAAAGATAGCGCC

Ace file of the UniGene sp_v3.0_unigene48314 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative GTPase-activating protein [Oryza sativa Japonica Group] dbj\|BAE79746.1\| putative GTPase-activating protein [Oryza sativa Japonica Group] gb\|EEC69756.1\| hypothetical protein OsI_00002 [Oryza sativa Indica Group] gb\|EEE53688.1\| hypothetical protein	-	-	6.0e-33	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Source	Gene names
Sma3	At2g43490; At3g59570/T16L24_120; GSVIVT00034596001; GSVIVT00034607001; OSJNOa264G09.1; Os01g0100100; OsI_00002; OsJ_00001; P0672D08.1; PHYPADRAFT_151822; POPTRDRAFT_587393; POPTRDRAFT_802561; POPTRDRAFT_810296; RCOM_0414400; T16L24.120; VITISV_034214;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	Rab GTPase activator activity	GO:0005097	Molecular Function	-
Sma3	regulation of Rab GTPase activity	GO:0032313	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Rab-GTPase-TBC domain	IPR000195	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G43490.1	Ypt/Rab-GAP domain of gyp1p superfamily protein chr2:18055106-18058179 REVERSE LENGTH=745	1.96182e-44	73%
RefSeq	Arabidopsis thaliana	NP_001118517.1	RAB GTPase activator protein [Arabidopsis thaliana]	1.96182e-44	73%
RefSeq	Populus trichocarpa	XP_002328018.1	predicted protein [Populus trichocarpa]	4.99997e-41	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVH9

Fln msg: Distance to subject end: 399 aas, your sequence is shorter than subject: 100 - 585

Fln protein: WHAAFDSEGRPVGFQKALKTIIFGGVDASIRAEVWEYLLGCYALSSTTENRQQLRISRRKRYRDLIVQCQMMHSSIGTGSLAYTVGSKVMDVRIMSKDSA

Protein Length: 101

Fln nts: ATGGCATGCGGCTTTTGACAGTGAGGGCAGGCCAGTGGGGTTCCAGAAGGCTCTCAAGACAATTATTTTTGGGGGTGTGGATGCATCTATAAGGGCAGAAGTTTGGGAATATTTGCTTGGTTGTTATGCACTTAGCAGCACTACAGAGAATCGGCAGCAGTTAAGGATATCTCGAAGGAAGAGATATAGAGATTTGATTGTCCAATGTCAAATGATGCACTCTAGCATTGGTACTGGTTCACTTGCTTACACTGTTGGGTCTAAAGTAATGGATGTGCGGATAATGTCTAAAGATAGCGCC

Fln Alignment:

CL8614Contig1___WHAAFDSEGRPV-GFQKALKTIIFGGVDASIRAEVWEYLLGCYALSSTTENRQQLRISRRKRYRDLIVQCQMMHS
A9NVH9_______________WSRAFSPDGRLVDGGLKVLKIVRSGGIESRIRAEVWPFLLGVYDLMSSKKERDLERIRMREEYEKLRRQCEFLQS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain