SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48229

Length: 4333 nt

UniGene Fasta

>sp_v3.0_unigene48229
TAATTTGCACAAATTTTGTTTGAAAAAACAATTTGAAGTGATTCAAGGGGCCTATTGAAGCATATATATCATTGTTTGATTCCAAAATGCCTCAAAACAAAAAACAAAAAAATGGACACAACTAGTAAGAAACCAAAAAGCTCTTCTATGACATAAGAAGAAGAGGAAGAAATGCAACATGGTATATCAAATTTACCAAACCAAGTGCAACAAATTTCGCTCTCGCAAAAATAAAAATAAAAAATGAATTAGAATCCATGATGAATTTTAAGATAGATGGTATAAAAACAGACATGGAAGTTAAGATAGATGTTAAAAAAGGGACATGGGATTTTTGGATGATGGTTTAAAAATAGACATGGAAGCAATGATGAATGTCAAGATAGAGGGGTTAAAGGAAGGTTTGGAAAAGTTGTTAGAAGAAAGGGTTCTCAATGGTGACAAAGCAATCCATGAACATCATGATGAAGAAAAAAGAATATGAATTATGGTTTTAGAGACTCCAATATGGGGTTTAAGGTGGGTTTAAGAACCAACACATTCCCAAGATATATATGAGGAAGTTTGATGGCAATGATCTGATAACTTGGATACTATAGATGGAGAAATATTTTGATCTACAGGATGTGAAACCCTCACAAAAGGTACATATTACATCTTTATATTGATTTCAACCCAATCTGTTTGTATTGTATAGATGGCTTTGTTCTCGTAAACCACTTGTCACCTGATCAATTTTTATGGAGGAAATGATAGCACATTATGAAGATATAAAGAGCAACACCTTATTTAGCAAATTGATAAATCTAAAACAAAAAGGTTCAATGGCGGAGCACATTAAAGACTTCCAAAAATTGAATATTAGGGTAACTGATATTCTAGAGGAGCATAGGATTGATCTCTTCATAGGGACTTTAAAATATAACATCCAACAAGAGGTTCACCTATGGGAACCTGATTCATTGGAGAAGGCATTCAAGGTGGCAAGAAAAGTTGAAAGCAAAATTATGGAAACAAGGAAGTCTATCATTCACAACTATAAATATGTAAGTGTTGCTACTCCTAGTCTTCTCCAACCTATAAGGTTGACACCACAACAATTGGAGGAAAGAAAAGGAAAAAGGGCTTTGTTACAGTTGTGATGGAAAATACACTAAAGGTCATAAGTGTGCTGAGAATAAATTATTCTACATAGATTATGAAGAGGAGGAAGAAAAGGAACAAGAAACATCAAAAGAGGAGGATATACACTAGGAAACAACCCCAGAGAAAGAATAAATGAATCTGACCATATCTTGTAATGCATTGGCAGGAATTACCACTCCTCAAACTCTCAAGATAGAAGGATATATCAAGAAGGAAAAGATAACAGTGTTCATTGATTCAGGTAGTACCCATAATGTTATTCATTGTAAGATAGCCAAGGAATTGACTTGCTTCCTATATACAACACCAGAGTGTCAAGTGATGGTTGCAAATGGAGGAGCTATAAATTGATCTGGAAAGTGTCATAATATCAAGCTAACCATGGGGTGATATGTATTGAATAGTCCAATGATTTACATTCCAATGGTTGGTGTTGATGCTGTACTAGGAGTCGAATGGTTACAATCTTTGGGGACAATAGCTTTCAATTTTCAAGAACTTTTCTTGAAAGTTTTTTGGGAAGGAAAGGAAGTTGAATTAAGGGGTATTGCAGGGAAACTGGGAAAGGTAATCAACTCTAATGCCATGAAAAAGCTTATGAAGAAAGAAAAATGAGGTGTAATTGCACAATTATTTTCACTAGGGGTTCAAACATCGAAATCATATATTTCTCCATATCTCCAAAAAGTATTGGACAATCATTCCAAGGTGTTTGAGTCTCCCAAAGGCCTCCCACCTATTTGTGATCATGATCATGTGATTCACTTGATTCCAGGAACTGTTCCTCTAAACATAGTGCCTTACAGATATCCTTATGCCCAAAAGAGTGAAATTAAACATATGGTTGCATAAATGCTAGATGCTAGTATAATTCAACCTAGTCAAAGTTCTTTCTCTACTCTAGTAGTATTGGTGCACAAGAAGGATGGATCATGGGATATGTGTCCAAATTATAGGGAGCTCAATAAGCTCACTATTAAAAATAAATTCCCCATTCCTTCCATTGATGAATTGTTGGATGAATTACATGGAGCAATTTACTTCACCAAGATGTATCTTCATTCAGAATATCATCAAATTAGAATGAAGATTGAATACATTCTGAAAACAACATTCAGAACTCATGAGGGTCATTATGAATTTTTTGTCATGCCTTTTGGCCTTACTAATGCACCTTCCACATTTCAAGGTTTGATGAATTCCATTTTCAAACCCTTCCTTAGAAAATTTTTGTTTGTATTTTTTGATGATATACTAATCTACAACAAGTCTTAAAAGGATCATGTTCAAAACGTTGACGAGGTGTTCTTCACCAACAATTATATGTAAAAACCTCCAATTGTTTCTTTGGAGTATAGAAGGTGGAATGTTTGGGTCATATTATATCTCATGAGGGTTTTAAGGTAGACCCTAATAGAATAAAATCCATTAAGGAATGGAAAATCCACACAACCATAAAAATTCTTCAAGGATTTCTCGGGTTGACAAGATATTATTACAAGTTAGTTAAGAATTATGGGAGAATAACAACACCTCTAACATGATTACTAAATAAAGAGGCATTTTCTTGGACTCCAGAAGCAACAAAGACCTTTAAAAGTCTTAAAGAGGCAATTTGCCAAGCATTGGTCTTAGCTATGCCAAACTTAACAAAAACTTTTATTGTGGAATGTGTTGCTTCAGGAAATGGATTTGGTGTTGTTTTAAAGCAAGAAGGAAGATCCGTTGCTTTTGAAAGTCGTCCAATCAAAGGAAAGTATTTACACAAACCTATTTATAAGAAGGAAATGTTGGCAATAATACTTGCACTAAAGCAATGGCAACCTTACCTAATGGGAAGACACTTCAAGGTAAAGACAGATCATGATAGTCTTATATACTTTTTGGAACAAATATTATCTTCAGAAGAGAAACAAAAATAGGTGACAAAGATGTTGGGTTATGACTTTGAAATCATCTACAAAAAAGGGAAGCAAAAAGTTGTTGCAAATGCACTTGTAAGAAAGGATAAGGACGTCAAAGCATTGCTTTGTGCCATTTCTATTATCCAACTTGAGTGGATAATCGAAGCAAGGGATGAATGGAAGAATGATGAAGAGGTGTGGTCACTCATTCAAAAGTTCCAGCGAGATCCGAGTACATCTAATACATTTAGCTAAAAAAATCATTCATTATGGTACAAAGATCACTTATATCTTTGTAAGATATACCAACTCAAACAAGATATTATTTTGGAATTGCACACCTCTCCCTTAGGATGGCACTCAGGATTTTTAAAAACTTACCATAGGGTCAAGAAGGATTTGTTTTTATGGATGGTCTTAAATCTTATATTCAGAAATTTGTGGCAAAATGTTTGGTTTACCAAAAAAATAAAGTTGAGATAGTTAAGACCTCGGGTATGCTACAACCTTTAGCCATTCCAAGTCAGTGTTGGGAAGAGGTATCAATAGATTTTATCACAAGTTTACTCAAGTTTGAAGGAAAGAGCGTCATCATGGTGGTAGTTGATAGACTTACCAAGTATGCAAACTTTTGTGCATTATCTCATCTTCTTAAAGTCATCAAAGTTGCTATTGCATTTATGGAAAAAAGAATCAAAAGCTTCATGGAAATCCAAAGATTTTAGTAAGTGACAGAGATCCCATTTTCACTGGAAATTTTTGGATAGAATAATTTGCTTGTCTTTGTACTCAATTATCTCATAGCTCATCTTATCATCCTCAATTTGATGGGAAAACTGAGATAATGAACAAATGTTTTCAAAGATATCTTCGTTGCTTTGTATCTGACAAACAAACACAATGGGTCAAGTGGTTACCTCTAGCTGAATGGTGGTATAACACTGTGTTCCATATTAAACCAAAAATTACCCCATTTATGGCACTTTATAGATATCATCCATCATCCATCACATCATCTTTAAGAGAAAATTATAAGGTTTGAGCAATAGAATACCTCATCGAGCATCAACAACAAGTTCTCTAACTCTTAAAGGATAACCTCACTCTAACACAGAATCGAATGAAACAACAGGCAAATCTACATCATAACGAAAGAAGTTTTGATGTAGGTGACTGTGTTTTTTTATGGCTACAACCATACAAACAAATGTCTCTCAAAAAGGCTAAGAAGGATAATAAATTATCACCCGCGTACTCTGCGTTGATACCACTGCTTAAGCAGT

Ace file of the UniGene sp_v3.0_unigene48229

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Polyprotein	-	-	9.513e-09	-

Source	Gene names
Sma3	F23H6.1; H0425E08.11; H0522A01.6; H0820C10.2; LOC_Os03g41960; LOC_Os10g06380; LOC_Os10g10600; LOC_Os10g13530; LOC_Os10g18650; LOC_Os10g40890; LOC_Os11g15560; LOC_Os11g45000; LOC_Os12g10050; LOC_Os12g11810; LOC_Os12g16800; LOC_Os12g19700; LOC_Os12g24050; L

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWN2

Fln msg: your sequence is longer than subject: 141 - 66

Fln protein: MLDASIIQPSQSSFSTLVVLVHKKDGSWDMCPNYRELNKLTIKNKFPIPSIDELLDELHGAIYFTKMYLHSEYHQIRMKIEYILKTTFRTHEGHYEFFVMPFGLTNAPSTFQGLMNSIFKPFLRKFLFVFFDDILIYNKS*

Protein Length: 142

Fln nts: TAATTTGCACAAATTTTGTTTGAAAAAACAATTTGAAGTGATTCAAGGGGCCTATTGAAGCATATATATCATTGTTTGATTCCAAAATGCCTCAAAACAAAAAACAAAAAAATGGACACAACTAGTAAGAAACCAAAAAGCTCTTCTATGACATAAGAAGAAGAGGAAGAAATGCAACATGGTATATCAAATTTACCAAACCAAGTGCAACAAATTTCGCTCTCGCAAAAATAAAAATAAAAAATGAATTAGAATCCATGATGAATTTTAAGATAGATGGTATAAAAACAGACATGGAAGTTAAGATAGATGTTAAAAAAGGGACATGGGATTTTTGGATGATGGTTTAAAAATAGACATGGAAGCAATGATGAATGTCAAGATAGAGGGGTTAAAGGAAGGTTTGGAAAAGTTGTTAGAAGAAAGGGTTCTCAATGGTGACAAAGCAATCCATGAACATCATGATGAAGAAAAAAGAATATGAATTATGGTTTTAGAGACTCCAATATGGGGTTTAAGGTGGGTTTAAGAACCAACACATTCCCAAGATATATATGAGGAAGTTTGATGGCAATGATCTGATAACTTGGATACTATAGATGGAGAAATATTTTGATCTACAGGATGTGAAACCCTCACAAAAGGTACATATTACATCTTTATATTGATTTCAACCCAATCTGTTTGTATTGTATAGATGGCTTTGTTCTCGTAAACCACTTGTCACCTGATCAATTTTTATGGAGGAAATGATAGCACATTATGAAGATATAAAGAGCAACACCTTATTTAGCAAATTGATAAATCTAAAACAAAAAGGTTCAATGGCGGAGCACATTAAAGACTTCCAAAAATTGAATATTAGGGTAACTGATATTCTAGAGGAGCATAGGATTGATCTCTTCATAGGGACTTTAAAATATAACATCCAACAAGAGGTTCACCTATGGGAACCTGATTCATTGGAGAAGGCATTCAAGGTGGCAAGAAAAGTTGAAAGCAAAATTATGGAAACAAGGAAGTCTATCATTCACAACTATAAATATGTAAGTGTTGCTACTCCTAGTCTTCTCCAACCTATAAGGTTGACACCACAACAATTGGAGGAAAGAAAAGGAAAAAGGGCTTTGTTACAGTTGTGATGGAAAATACACTAAAGGTCATAAGTGTGCTGAGAATAAATTATTCTACATAGATTATGAAGAGGAGGAAGAAAAGGAACAAGAAACATCAAAAGAGGAGGATATACACTAGGAAACAACCCCAGAGAAAGAATAAATGAATCTGACCATATCTTGTAATGCATTGGCAGGAATTACCACTCCTCAAACTCTCAAGATAGAAGGATATATCAAGAAGGAAAAGATAACAGTGTTCATTGATTCAGGTAGTACCCATAATGTTATTCATTGTAAGATAGCCAAGGAATTGACTTGCTTCCTATATACAACACCAGAGTGTCAAGTGATGGTTGCAAATGGAGGAGCTATAAATTGATCTGGAAAGTGTCATAATATCAAGCTAACCATGGGGTGATATGTATTGAATAGTCCAATGATTTACATTCCAATGGTTGGTGTTGATGCTGTACTAGGAGTCGAATGGTTACAATCTTTGGGGACAATAGCTTTCAATTTTCAAGAACTTTTCTTGAAAGTTTTTTGGGAAGGAAAGGAAGTTGAATTAAGGGGTATTGCAGGGAAACTGGGAAAGGTAATCAACTCTAATGCCATGAAAAAGCTTATGAAGAAAGAAAAATGAGGTGTAATTGCACAATTATTTTCACTAGGGGTTCAAACATCGAAATCATATATTTCTCCATATCTCCAAAAAGTATTGGACAATCATTCCAAGGTGTTTGAGTCTCCCAAAGGCCTCCCACCTATTTGTGATCATGATCATGTGATTCACTTGATTCCAGGAACTGTTCCTCTAAACATAGTGCCTTACAGATATCCTTATGCCCAAAAGAGTGAAATTAAACATATGGTTGCATAA_-_ATGCTAGATGCTAGTATAATTCAACCTAGTCAAAGTTCTTTCTCTACTCTAGTAGTATTGGTGCACAAGAAGGATGGATCATGGGATATGTGTCCAAATTATAGGGAGCTCAATAAGCTCACTATTAAAAATAAATTCCCCATTCCTTCCATTGATGAATTGTTGGATGAATTACATGGAGCAATTTACTTCACCAAGATGTATCTTCATTCAGAATATCATCAAATTAGAATGAAGATTGAATACATTCTGAAAACAACATTCAGAACTCATGAGGGTCATTATGAATTTTTTGTCATGCCTTTTGGCCTTACTAATGCACCTTCCACATTTCAAGGTTTGATGAATTCCATTTTCAAACCCTTCCTTAGAAAATTTTTGTTTGTATTTTTTGATGATATACTAATCTACAACAAGTCTTAA___AAGGATCATGTTCAAAACGTTGACGAGGTGTTCTTCACCAACAATTATATGTAAAAACCTCCAATTGTTTCTTTGGAGTATAGAAGGTGGAATGTTTGGGTCATATTATATCTCATGAGGGTTTTAAGGTAGACCCTAATAGAATAAAATCCATTAAGGAATGGAAAATCCACACAACCATAAAAATTCTTCAAGGATTTCTCGGGTTGACAAGATATTATTACAAGTTAGTTAAGAATTATGGGAGAATAACAACACCTCTAACATGATTACTAAATAAAGAGGCATTTTCTTGGACTCCAGAAGCAACAAAGACCTTTAAAAGTCTTAAAGAGGCAATTTGCCAAGCATTGGTCTTAGCTATGCCAAACTTAACAAAAACTTTTATTGTGGAATGTGTTGCTTCAGGAAATGGATTTGGTGTTGTTTTAAAGCAAGAAGGAAGATCCGTTGCTTTTGAAAGTCGTCCAATCAAAGGAAAGTATTTACACAAACCTATTTATAAGAAGGAAATGTTGGCAATAATACTTGCACTAAAGCAATGGCAACCTTACCTAATGGGAAGACACTTCAAGGTAAAGACAGATCATGATAGTCTTATATACTTTTTGGAACAAATATTATCTTCAGAAGAGAAACAAAAATAGGTGACAAAGATGTTGGGTTATGACTTTGAAATCATCTACAAAAAAGGGAAGCAAAAAGTTGTTGCAAATGCACTTGTAAGAAAGGATAAGGACGTCAAAGCATTGCTTTGTGCCATTTCTATTATCCAACTTGAGTGGATAATCGAAGCAAGGGATGAATGGAAGAATGATGAAGAGGTGTGGTCACTCATTCAAAAGTTCCAGCGAGATCCGAGTACATCTAATACATTTAGCTAAAAAAATCATTCATTATGGTACAAAGATCACTTATATCTTTGTAAGATATACCAACTCAAACAAGATATTATTTTGGAATTGCACACCTCTCCCTTAGGATGGCACTCAGGATTTTTAAAAACTTACCATAGGGTCAAGAAGGATTTGTTTTTATGGATGGTCTTAAATCTTATATTCAGAAATTTGTGGCAAAATGTTTGGTTTACCAAAAAAATAAAGTTGAGATAGTTAAGACCTCGGGTATGCTACAACCTTTAGCCATTCCAAGTCAGTGTTGGGAAGAGGTATCAATAGATTTTATCACAAGTTTACTCAAGTTTGAAGGAAAGAGCGTCATCATGGTGGTAGTTGATAGACTTACCAAGTATGCAAACTTTTGTGCATTATCTCATCTTCTTAAAGTCATCAAAGTTGCTATTGCATTTATGGAAAAAAGAATCAAAAGCTTCATGGAAATCCAAAGATTTTAGTAAGTGACAGAGATCCCATTTTCACTGGAAATTTTTGGATAGAATAATTTGCTTGTCTTTGTACTCAATTATCTCATAGCTCATCTTATCATCCTCAATTTGATGGGAAAACTGAGATAATGAACAAATGTTTTCAAAGATATCTTCGTTGCTTTGTATCTGACAAACAAACACAATGGGTCAAGTGGTTACCTCTAGCTGAATGGTGGTATAACACTGTGTTCCATATTAAACCAAAAATTACCCCATTTATGGCACTTTATAGATATCATCCATCATCCATCACATCATCTTTAAGAGAAAATTATAAGGTTTGAGCAATAGAATACCTCATCGAGCATCAACAACAAGTTCTCTAACTCTTAAAGGATAACCTCACTCTAACACAGAATCGAATGAAACAACAGGCAAATCTACATCATAACGAAAGAAGTTTTGATGTAGGTGACTGTGTTTTTTTATGGCTACAACCATACAAACAAATGTCTCTCAAAAAGGCTAAGAAGGATAATAAATTATCACCCGCGTACTCTGCGTTGATACCACTGCTTAAGCAGT

Fln Alignment:

CL7391Contig1___FSTLVVLVHKKDGSWDMCPNYRELNKLTIKNKFPIPSIDELLDELHGAIYFTKMYLHSEYHQIRM
A9NWN2_______________YSTPIILVRINDGSYILCNNCRVLNEITIKDKFHISIVDELLDELYGTMYFLELDQKSNYYHIRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain