SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48085

Length: 2721 nt

UniGene Fasta

>sp_v3.0_unigene48085
CTGGGATTTTTTCCAAGGTGGGTAAGAGTATATATGAATAGTGATGCCTGCAGGGACCGAATTGAATTCAATTGAATTGAACTACGCGTATATAGTTCCTTGTTGTACACGGTTGTGGTGTTCTTCTGACCGCAGGCTCTTTGCTCTCACAGTTTCATACACACAAATCTAGAGGGGGAGCAGGCTTATATCTGGACAGGGAGCATGAAATTGGGGGTTTTAATTTCAAGAAAGGATATAAGTATATTCATTAATTTGTTCATTCATCCATCAATGGAGATGTGATTAGGATTTCAGGGGGATGAACTTTTGTTTTGTCTTTTGCTGTACAGTGATCTATGTGTTCAGAAGGGTATAGATATATTTGGAGTTAAATGATCTCAGGGGAACTATGAATGAACGCAATTACTCCCAGGACTGACAAGGGGTGGAGATTGCCAGTCTACGAGGTCTAGGTATAGTGCAGTTTGTATGTTGTACTGAAGTGGGTGTGGGTGCAGCAGGCCTGAAGGGCCAAGAGGACTGAGGATCATAATAATATACATAATCCCCTACATGATCATGCAAAATCCAAATAGCTCTTTATCGATCTTAGCTCCAACCCCACAAAATAAACTCCTTTCTGTTCCCCTACCCCTCTGAGCGATTTTCTTTCTTCTCCTGACAACACATATACTCACGCACGCACGCATACTCTTGCCCCTGCTCTGCCCTGCTCTCGTTCTCAATAATAATACACACACACTTCCGACACCAAGCAAGCCTGTCTATGGTGATGCTTTTCTTACACATGTACAGAGGGGAATCTGTTTCAGTCTGCCACCGGGATTCATCCGTAGTGATCTGCCTGCCCCATCCATCCCATCGTTCCCGTCCCGTTCTCCCACATCTCACAACACCCGTATAAGAAGTCAACACCCACACCCCGTCTCCCACCAGTTCTTTTCATCAATTTCTTGTTATTATCTGGGTAGGGAGGGATTTATTCTCTATCAATTTTCAGTCCTGAATCTCGAAACCAGTGGTGGCAGCATTCAGCAGATTTCAGAAATGGAGGGCTTGAATTTTACGTATGCGCAGGACAAGGGTGACACACAGCTTCCCCCAGGGTTCAGGTTTCATCCCACTGACGAAGAGTTGATCACTCACTATCTTGTTAGAAAGGTCCTTGACAGCAACTTCTCAGGCCGAGCCATTGCTGAGGTCGACCTCAACAAGTGCGAGCCCTGGGATCTTCCAGAGAAAGCGAAGATGGGTGAGAAGGAATGGTACTTTTTCAGCCTCAGAGATCGCAAATATCCAACAGGGCTGCGCACCAACAGAGCCACAGAAGCGGGCTACTGGAAGGCCACTGGCAAGGACCGAGAGATTTTCAGTGCACGAGGTTCTTCCCTCGTTGGGATGAAGAAAACCCTAGTGTTTTACAAAGGCCGAGCTCCCAAGGGAGAGAAGAGCAACTGGGTGATGCACGAGTATCGCCTCGAGGGAAAATTTTCGTACAATCAACTTCCCAAGACTTCCAAGGATGAATGGGTGGTTTGTCGTATATTTCAGAAAAGTATAGGAGCAAAGAAGAGTTCATCTGGATTCAACAGAAGCTCATATCTTGACGTTGGGTCTCCTTCCTTGCCCCCATTATCAGCAGTCAATGATGAAAGTGGATCTCTGGAGAGTGAAGGATCTGCAAGGGAGCATGTGTCCTGCTTCTCCAATCCACAGTACAACAACAACAATAATAGTGGCTTCAGGACCCCTAGTCATCATCTACAGCAACAGAGAACATCTGCAGATTCTGCAGAACTCTCTGAGATTGCCAGCATTATGAGGAGCACCGCTCCTTTCATACACAACATGGTTCTAAATGACCCAAGGCTCAGCATGAATAGCATTAACAGGCCTAGTCCATTCCCTCCATTTCTGAATCCGAGACAAGAGAACAACCATGTCCCACAGGCTCCTTTGCTTTTCTCACAGTTGGCTGCATTCCCACCAAATTCCATACCTACAAATGTGAGCTTCCCAATGGAAAATCAGGCCCAACTCCATAGCCTCCTTCCAGGGTTATCCCAGAATAATCTCCTGAGGGCATTATTTGATCAATACAACGATCCTGGAACCCTAAAGCATTGCAAGTTGGAACCTTCTTTTGGTCCACAGCTAGACAAATCTGGCAAAGTTGAGTCTGCAAGTCAGTGGGTTGAGAGTCAGCCACGACCTGAAATCAACGGGCTTCCTCAGCAGATGCAGCCTCAACCTGCACTCTCCCTTCCTCATTCTGACACGTGTTTGGGTACTGAAATAAACTCTGAAATTGTTAATCGTCTTAACCGCCCATTTCAGGTAGGCCCTTCATCAACTACTAGTCCAGTGGATCTGGACAGCTTCTGGGGCTATTGATTTCTCTCCACCCAGACCATTTCTATCGCCAAAAGCTGCAATATGTAAATATAATCTACGAAGGCTTTTGAACAAAGGCTTGGACCAAAGAAACACTAAGCACATCTGGTTTTGATTGGCCTCTAAGTTGCTGGTGATTATGTGTTAAGACACAATATCATCTATTAGAAGTTAATGATGTGTTTAATTCGGCTGGATTGATAGAAATTCTGATTTCTCAATGTTCTCATTGTTGTTTTTGATAGGAAAAAAATGTAAAATCTTAGACTCTCAGGCCTTTAGCAGACCTGTGATTCTTTGGCACTTAAGCGATTTGATGCTGGT

Ace file of the UniGene sp_v3.0_unigene48085

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAM [Petunia x hybrida] emb\|CAA63102.2\| NAM [Petunia x hybrida]	-	-	57%
FL-Next	tr=Cup-shaped cotyledon; Picea abies (Norway spruce) (Picea excelsa).	-	-	93%
Sma3	NAC domain protein, IPR003441	-	-	-

Source	Gene names
Sma3	AT4g10350; At1g12260; At1g56010; At1g76420; At2g24430; At3g04060; At3g10500; At3g15170; At3g15510; At3g29035; At4g10350; At5g07680; At5g18270; At5g39610; At5g53950; At5g61430; AtNAC2; B1109A06.36; B1153E06.1; B1267B06.11; CUC1; CUC2; CUC3; EMB2749; F13M14

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	meristem initiation	GO:0010014	Biological Process	-
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	-
Sma3	formation of organ boundary	GO:0010160	Biological Process	-
Sma3	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	-
Sma3	secondary shoot formation	GO:0010223	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	gynoecium development	GO:0048467	Biological Process	-
Sma3	regulation of timing of organ formation	GO:0048504	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	negative regulation of cell division	GO:0051782	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein L24e-related	IPR000988	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3		IPR015706	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G61430.1	ANAC100, ATNAC5, NAC100 NAC domain containing protein 100 chr5:24701328-24702553 REVERSE LENGTH=336	52%
RefSeq	Arabidopsis thaliana	NP_200951.1	NAC domain containing protein 100 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002316880.1	NAC domain protein, IPR003441, partial [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: G8CPZ0

Fln msg:

Fln protein: MEGLNFTYAQDKGDTQLPPGFRFHPTDEELITHYLVRKVLDSNFSGRAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSARGSSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSYNQLPKTSKDEWVVCRIFQKSIGAKKSSSGFNRSSYLDVGSPSLPPLSAVNDESGSLESEGSAREHVSCFSNPQYNNNNNSGFRTPSHHLQQQRTSADSAELSEIASIMRSTAPFIHNMVLNDPRLSMNSINRPSPFPPFLNPRQENNHVPQAPLLFSQLAAFPPNSIPTNVSFPMENQAQLHSLLPGLSQNNLLRALFDQYNDPGTLKHCKLEPSFGPQLDKSGKVESASQWVESQPRPEINGLPQQMQPQPALSLPHSDTCLGTEINSEIVNRLNRPFQVGPSSTTSPVDLDSFWGY*

Protein Length: 450

Fln nts: CTGGGATTTTTTCCAAGGTGGGTAAGAGTATATATGAATAGTGATGCCTGCAGGGACCGAATTGAATTCAATTGAATTGAACTACGCGTATATAGTTCCTTGTTGTACACGGTTGTGGTGTTCTTCTGACCGCAGGCTCTTTGCTCTCACAGTTTCATACACACAAATCTAGAGGGGGAGCAGGCTTATATCTGGACAGGGAGCATGAAATTGGGGGTTTTAATTTCAAGAAAGGATATAAGTATATTCATTAATTTGTTCATTCATCCATCAATGGAGATGTGATTAGGATTTCAGGGGGATGAACTTTTGTTTTGTCTTTTGCTGTACAGTGATCTATGTGTTCAGAAGGGTATAGATATATTTGGAGTTAAATGATCTCAGGGGAACTATGAATGAACGCAATTACTCCCAGGACTGACAAGGGGTGGAGATTGCCAGTCTACGAGGTCTAGGTATAGTGCAGTTTGTATGTTGTACTGAAGTGGGTGTGGGTGCAGCAGGCCTGAAGGGCCAAGAGGACTGAGGATCATAATAATATACATAATCCCCTACATGATCATGCAAAATCCAAATAGCTCTTTATCGATCTTAGCTCCAACCCCACAAAATAAACTCCTTTCTGTTCCCCTACCCCTCTGAGCGATTTTCTTTCTTCTCCTGACAACACATATACTCACGCACGCACGCATACTCTTGCCCCTGCTCTGCCCTGCTCTCGTTCTCAATAATAATACACACACACTTCCGACACCAAGCAAGCCTGTCTATGGTGATGCTTTTCTTACACATGTACAGAGGGGAATCTGTTTCAGTCTGCCACCGGGATTCATCCGTAGTGATCTGCCTGCCCCATCCATCCCATCGTTCCCGTCCCGTTCTCCCACATCTCACAACACCCGTATAAGAAGTCAACACCCACACCCCGTCTCCCACCAGTTCTTTTCATCAATTTCTTGTTATTATCTGGGTAGGGAGGGATTTATTCTCTATCAATTTTCAGTCCTGAATCTCGAAACCAGTGGTGGCAGCATTCAGCAGATTTCAGAA_-_ATGGAGGGCTTGAATTTTACGTATGCGCAGGACAAGGGTGACACACAGCTTCCCCCAGGGTTCAGGTTTCATCCCACTGACGAAGAGTTGATCACTCACTATCTTGTTAGAAAGGTCCTTGACAGCAACTTCTCAGGCCGAGCCATTGCTGAGGTCGACCTCAACAAGTGCGAGCCCTGGGATCTTCCAGAGAAAGCGAAGATGGGTGAGAAGGAATGGTACTTTTTCAGCCTCAGAGATCGCAAATATCCAACAGGGCTGCGCACCAACAGAGCCACAGAAGCGGGCTACTGGAAGGCCACTGGCAAGGACCGAGAGATTTTCAGTGCACGAGGTTCTTCCCTCGTTGGGATGAAGAAAACCCTAGTGTTTTACAAAGGCCGAGCTCCCAAGGGAGAGAAGAGCAACTGGGTGATGCACGAGTATCGCCTCGAGGGAAAATTTTCGTACAATCAACTTCCCAAGACTTCCAAGGATGAATGGGTGGTTTGTCGTATATTTCAGAAAAGTATAGGAGCAAAGAAGAGTTCATCTGGATTCAACAGAAGCTCATATCTTGACGTTGGGTCTCCTTCCTTGCCCCCATTATCAGCAGTCAATGATGAAAGTGGATCTCTGGAGAGTGAAGGATCTGCAAGGGAGCATGTGTCCTGCTTCTCCAATCCACAGTACAACAACAACAATAATAGTGGCTTCAGGACCCCTAGTCATCATCTACAGCAACAGAGAACATCTGCAGATTCTGCAGAACTCTCTGAGATTGCCAGCATTATGAGGAGCACCGCTCCTTTCATACACAACATGGTTCTAAATGACCCAAGGCTCAGCATGAATAGCATTAACAGGCCTAGTCCATTCCCTCCATTTCTGAATCCGAGACAAGAGAACAACCATGTCCCACAGGCTCCTTTGCTTTTCTCACAGTTGGCTGCATTCCCACCAAATTCCATACCTACAAATGTGAGCTTCCCAATGGAAAATCAGGCCCAACTCCATAGCCTCCTTCCAGGGTTATCCCAGAATAATCTCCTGAGGGCATTATTTGATCAATACAACGATCCTGGAACCCTAAAGCATTGCAAGTTGGAACCTTCTTTTGGTCCACAGCTAGACAAATCTGGCAAAGTTGAGTCTGCAAGTCAGTGGGTTGAGAGTCAGCCACGACCTGAAATCAACGGGCTTCCTCAGCAGATGCAGCCTCAACCTGCACTCTCCCTTCCTCATTCTGACACGTGTTTGGGTACTGAAATAAACTCTGAAATTGTTAATCGTCTTAACCGCCCATTTCAGGTAGGCCCTTCATCAACTACTAGTCCAGTGGATCTGGACAGCTTCTGGGGCTATTGA___TTTCTCTCCACCCAGACCATTTCTATCGCCAAAAGCTGCAATATGTAAATATAATCTACGAAGGCTTTTGAACAAAGGCTTGGACCAAAGAAACACTAAGCACATCTGGTTTTGATTGGCCTCTAAGTTGCTGGTGATTATGTGTTAAGACACAATATCATCTATTAGAAGTTAATGATGTGTTTAATTCGGCTGGATTGATAGAAATTCTGATTTCTCAATGTTCTCATTGTTGTTTTTGATAGGAAAAAAATGTAAAATCTTAGACTCTCAGGCCTTTAGCAGACCTGTGATTCTTTGGCACTTAAGCGATTTGATGCTGGT

Fln Alignment:

CL5174Contig1___MEGLNFTYAQDKGDTQLPPGFRFHPTDEELITHYLVRKVLDSNFSGRAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSARGSSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSYNQLPKTSKDEWVVCRIFQKSIGAKKSSSGFNRSSYLDVGSPSLPPLSAVNDESGSLESEGSAREHVSCFSNPQY-XXXXXSGFRTPSHHLQQQRTSADSAELSEIASIMRSTAPFIHNMVLNDPRLSMNSINRPSPFPPFLNPRQENNHVPQAPLLFSQLAAFPPNSIPTNVSFPMENQAQLHSLLPGLSQNNLLRALFDQYNDPGTLKHCKLEPSFGPQLDKSGKVESASQWVESQPRPEI----NGLPQQMQPQPALSLPHSDTCLGTEINSEIV-NRLNRPFQVGPSSTTSPVDLDSFWGY
G8CPZ0_______________MEGLNFTYAQDKGDTQLPPGFRFHPTDEELITHYLVRKVVDSTFTGRAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFNARSSSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSYNQLPKTSKDEWVVCRIFQKSIGAKKSSSGFNRSSYLDVGSPSLPPLSAVNDESGSLESEGSAREHVSCFSNPQYNNNNNNSGFRTPSHHPQQQRTSADSAELSEIASIMRSTAPFIHNMALNDPRLSMNSISRPSPFPPFLNLRQESNHVQQPPLLFSQLAAFPPNSIPTNVTFPMENQAQLHSLLPGLPQNALLRALFDQYNDPGTLKHCKLEPSFGPQLDKSGKVEQASQWVETQPRPEINMENNGLPQQMQPQPALSLPQADTCLGIEMNSEIVCNRLNRSFQVGPSS-TSPVDLDGFWGY

SSRs (tot: 2)

Start position	End position	Sequence	Length
678	691	CACG CACG CACG CA	14
1721	1733	ACA ACA ACA ACA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain