SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48065

Length: 816 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene48065

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 [Medicago truncatula]	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Transposon protein, putative, Mutator sub-class, expressed	-	-	8.698e-11	-

Source	Gene names
Sma3	5; At1g30440; At3g08570; At3g44820; At5g03250; At5g13600; At5g64330; B1394A07.4; F15A17_280; F17O14.4; F18B3.120; F26G16.2; F28D10_10; GSVIVT00001901001; GSVIVT00013470001; GSVIVT00018179001; GSVIVT00022105001; GSVIVT00023199001; GSVIVT00028396001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	phototropism	GO:0009638	Biological Process	-
Sma3	blue light signaling pathway	GO:0009785	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3		IPR014778	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G30440.1	Phototropic-responsive NPH3 family protein chr1:10759475-10762199 FORWARD LENGTH=665	52%
RefSeq	Arabidopsis thaliana	NP_174332.1	Phototropic-responsive NPH3-like protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002298828.1	predicted protein, partial [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Distance to subject end: 307 aas, your sequence is shorter than subject: 271 - 648

Fln protein: NFHIILPDIPGGADAFELAAKFCYGVKLELTPINVTPLRCAAEYLEMTEDFGEGNLILKTEGFLNHVVLRSWKDSVRTLQSCECLMPLAEELNIVKKCVDSIAMKACTDPSLFGWPMTEGMGMQGMQNTRGGVLWNGINPGTRQRGALLDWWYEDVAELSLPFYKRVISAMEAKGIRQESIAGAVMYYAKKFIPGLTRRQGTAKPLPLNSAPCEADQRELLETIESLLPDYRAGNTTKFLFGLLRTANILNASDSCKRSLERRIGLQLEHA

Protein Length: 272

Fln nts: GAATTTCCATATTATCCTTCCAGACATTCCAGGAGGCGCGGATGCATTTGAGCTTGCTGCAAAATTCTGCTATGGTGTCAAACTGGAGCTTACACCCATCAATGTAACCCCACTTCGCTGCGCTGCAGAATATTTGGAAATGACAGAGGACTTTGGTGAGGGCAATCTGATACTGAAAACTGAGGGGTTCCTCAACCATGTGGTGCTTAGAAGTTGGAAGGATTCTGTCCGGACTCTACAAAGCTGTGAGTGTTTAATGCCACTGGCCGAAGAACTTAATATTGTGAAGAAATGTGTTGATTCAATTGCTATGAAGGCTTGCACGGATCCCAGTCTCTTTGGTTGGCCAATGACCGAGGGAATGGGGATGCAAGGGATGCAGAATACTAGAGGAGGTGTTCTTTGGAATGGAATTAACCCAGGAACAAGACAAAGAGGGGCGCTATTAGATTGGTGGTATGAAGATGTTGCTGAGTTGAGCTTACCCTTCTACAAAAGAGTAATATCCGCAATGGAAGCTAAAGGAATTAGGCAAGAGAGCATTGCAGGGGCAGTAATGTACTATGCCAAGAAATTCATTCCTGGGTTAACACGGCGGCAAGGGACAGCAAAACCCCTGCCCTTAAACTCTGCTCCTTGCGAGGCTGATCAGAGGGAACTTTTGGAAACAATAGAGAGCCTCCTTCCTGACTATAGAGCTGGTAATACAACGAAATTTCTCTTTGGATTACTACGGACAGCGAATATACTGAATGCTTCTGATTCATGCAAGAGAAGTCTTGAGAGGAGAATTGGGTTACAGCTTGAACATGCGAC

Fln Alignment:

CL4803Contig1___NFHIILPDIPGGADAFELAAKFCYGVKLELTPINVTPLRCAAEYLEMTEDFGEGNLILKTEGFLNHVVLRSWKDSVRTLQSCECLMPLAEELNIVKKCVDSIAMKACTDPSLFGWPMTEGMGMQGMQNTRGGVLWNGINPGTRQRGALLDWWYEDVAELSLPFYKRVISAMEAKGIRQESIAGAVMYYAKKFIPGLTRRQGTAKPLPLNSAPCEADQRELLETIESLLPDYRAGNTTKFLFGLLRTANILNASDSCKRSLERRIGLQLEHA
B8LPD8_______________SFHIILPDIPGGADAFELAAKFCYGVKLELTPINVTPLRCAAEYLEMTEEFGEGNLILKTEGFLNHVVLRSWKDSVRTLQSCECLMPLAEELNIVKKCVDSIAMKACTDPSLFGWPMTEGMGMQGMQSTKGGVLWNGINAGTRQRTAHLDWWHEDVAELSLPFYKRVISAMEAKGIRQESIAGAVMYYAKKFIPGLTRRQGIAKTLSLTSAPCEADQRELLETIESLLPDHRAGNTTKFLFGLLRTANILNASDSCKKSLERRIGLQLEHA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain