SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48045

Length: 517 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene48045
TCTTCACCTTTGCTCTTGCATTCATGGCTGGAACAAACGATATCCCTGCATCGTTTGGCACATCAGTCGGTTCAGGTGCATTGACATTGTCACAATCGGCTGCTTTTGCATTTTTGATGGAAGTATCAGGAGCCACAATAATGGGAAATCTTACAGTTGATGTTTTGCAAACTGATATTTTGAAAGAGCAGCCCAATGCACCACTCCTTATGTGGGGATTCATGATTGCAATTATTGCTGCGACAATATGGCTAGCAATTGCAACATATATGAAGGTTCCTGTTTCCTCCTTTCTTTCAATAAAGGGAGCTATTATTGGTATATCAATCACTACTGAAGGGTTGCATTCTATTTATTGGAAGAAGTTTGATTCAAGTTCAGCGTTAAAGGTGGGAGGTGTTGTGTCAATAGTCTTGTCCTGGATTATTGCACCTTTGCTCGCTGCCGCAGCCGCTTTCATACTTTTCAGTTTAACACGCCTTGTTCTACTAAGATCAGAAGCGACCCGACAAAGAGT

Ace file of the UniGene sp_v3.0_unigene48045 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphate transporter, putative n=1 Tax=Ricinus communis RepID=B9S8D5_RICCO	-	-	2.0e-18	34%
FL-Next	sp=Inorganic phosphate transporter 2-1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	36%

Source	Gene names
Sma3	VITISV_006370;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	phosphate ion transport	GO:0006817	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate transporter	IPR001204	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38954

Fln msg: Distance to subject end: 252 aas, your sequence is shorter than subject: 171 - 587

Fln protein: FTFALAFMAGTNDIPASFGTSVGSGALTLSQSAAFAFLMEVSGATIMGNLTVDVLQTDILKEQPNAPLLMWGFMIAIIAATIWLAIATYMKVPVSSFLSIKGAIIGISITTEGLHSIYWKKFDSSSALKVGGVVSIVLSWIIAPLLAAAAAFILFSLTRLVLLRSEATRQR

Protein Length: 172

Fln nts: TCTTCACCTTTGCTCTTGCATTCATGGCTGGAACAAACGATATCCCTGCATCGTTTGGCACATCAGTCGGTTCAGGTGCATTGACATTGTCACAATCGGCTGCTTTTGCATTTTTGATGGAAGTATCAGGAGCCACAATAATGGGAAATCTTACAGTTGATGTTTTGCAAACTGATATTTTGAAAGAGCAGCCCAATGCACCACTCCTTATGTGGGGATTCATGATTGCAATTATTGCTGCGACAATATGGCTAGCAATTGCAACATATATGAAGGTTCCTGTTTCCTCCTTTCTTTCAATAAAGGGAGCTATTATTGGTATATCAATCACTACTGAAGGGTTGCATTCTATTTATTGGAAGAAGTTTGATTCAAGTTCAGCGTTAAAGGTGGGAGGTGTTGTGTCAATAGTCTTGTCCTGGATTATTGCACCTTTGCTCGCTGCCGCAGCCGCTTTCATACTTTTCAGTTTAACACGCCTTGTTCTACTAAGATCAGAAGCGACCCGACAAAGAGT

Fln Alignment:

CL4621Contig1___FTFALAFMAGTNDIPASFGTSVGSGALTLSQSAAFAFLMEVSGATIMGNLTVDVLQTDILKE---QPNAPLLMWGFMXXXXXXXXXXXXATYMKVPVSSFLSIKGAIIGISITTEGLHSIYWKKFDSSSALKVGG--VVSIVL
Q38954_______________FGFYMAWNIGANDVANAMGTSVGSGALTIRQAVMTAAVLEFSGALLMGTHVTSTMQKGILMANVFQGKDMLLFAGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFW-----SSLAKVASSWVISPIL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain