SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48023

Length: 813 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene48023 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copine I-like protein n=4 Tax=Oryza RepID=Q6YYC5_ORYSJ	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Copine, putative	-	-	6.254e-17	-

Source	Gene names
Sma3	AT5G14420; At1g67800; At1g79380; At3g01650; At5g14420; At5g63970; B1142B04.3; B1417F08.38; CHLREDRAFT_119111; CLP; COP1; F18O22.210; F4P13.19; GSVIVT00002112001; GSVIVT00006016001; GSVIVT00013098001; GSVIVT00015941001; GSVIVT00020639001; GSVIVT00030728001

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	cytokinin metabolic process	GO:0009690	Biological Process	-
Sma3	auxin metabolic process	GO:0009850	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Copine	IPR010734	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79380.1	Ca(2)-dependent phospholipid-binding protein (Copine) family chr1:29860812-29863023 FORWARD LENGTH=401	54%
RefSeq	Arabidopsis thaliana	NP_565206.1	Ca(2)-dependent phospholipid-binding family protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002306262.1	predicted protein, partial [Populus trichocarpa]	76%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain