SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48012

Length: 551 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene48012
TGAAGATATGGTCTTTTCTCAAGTATTTGATGAAGATAGAACAAAGCATACATGGTATCTTTTTAGATCATATGTTGAGGACAATAGAAAGACCAAGTGGTGTTCAGCTACTAGTTGTTAGTACAGTGTAGGCTCCGTTATGGGAAGTGGCCCTTATGATGTTACCTCCAAATGCAAATTGTACAGATTGAGAAGTTTAGTGATAAACAGTGTCAACCTGTTTCTTCACTGAAGTTCGTCACAGAAGCATGGCTACAAATAGTTGAATATAGATGTGTTTTGAGTTGGACATATGCATACAGTTACAGCTAGGCCAAAATATCCCCATGAGATAGCGGTTTGGATAGCTGAGACTGACAAAGAGCCAGAGCCCACCCCTTTAGACTTTAAAATGCAAGCTCACGAATTGCTTTGTCTGCATGGAAGCAGATGTTTTGTTTCCTGGACTTGACCATGATGGAAATGGTCAGCCAGGTTTTGCAAGCTTGGTGATGGGGCATTGCCTTTATGAATCAGCTTCTCTAAAGACCTTCCGTCCTGACAGAAAAGTT

Ace file of the UniGene sp_v3.0_unigene48012 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Probable E3 ubiquitin-protein ligase ARI8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%

Source	Gene names
Sma3	ARI7; At2g31510; At3g30300; At3g30300/T6J22_5; GSVIVT00001925001; GSVIVT00004263001; GSVIVT00038094001; H0425E08.1; H9-5; MtrDRAFT_AC172742g11v1; OJ990528_30.1; OSIGBa0130B08.12; OSJNBa0076N16.22; Os04g0492100; OsI_16435; OsI_16442; OsJ_15295; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3		IPR004348	-	-
Sma3	Oxygen oxidoreductase covalent FAD-binding site	IPR006093	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G30300.1	O-fucosyltransferase family protein chr3:11921390-11924254 REVERSE LENGTH=677	1.0e-16	71%
RefSeq	Arabidopsis thaliana	NP_189649.2	O-fucosyltransferase family protein [Arabidopsis thaliana]	1.0e-16	71%
RefSeq	Populus trichocarpa	XP_002330934.1	predicted protein [Populus trichocarpa]	6.0e-20	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8W468

Fln msg: Warning!, your query overlaps and the subject is separated, Unexpected STOP codon at 3' end. Distance to subject end: 55 aas, your sequence is shorter than subject: 104 - 567

Fln protein: EDMVFSQVFDEDRTKHTWYLFRSYVEDNRKTKWCSATSC*YSVGSVMGSGPYDVTxxxxIVQIEKFSDKQCQPVSSLKFVTEAWLQIVEYRCVLSWTYAYSYS*

Protein Length: 105

Fln nts: TGAAGATATGGTCTTTTCTCAAGTATTTGATGAAGATAGAACAAAGCATACATGGTATCTTTTTAGATCATATGTTGAGGACAATAGAAAGACCAAGTGGTGTTCAGCTACTAGTTGTTAGTACAGTGTAGGCTCCGTTATGGGAAGTGGCCCTTATGATGTTACCxxxxxxxxxxxxATTGTACAGATTGAGAAGTTTAGTGATAAACAGTGTCAACCTGTTTCTTCACTGAAGTTCGTCACAGAAGCATGGCTACAAATAGTTGAATATAGATGTGTTTTGAGTTGGACATATGCATACAGTTACAGCTAGGCCAAAATATCCCCATGAGATAGCGGTTTGGATAGCTGAGACTGACAAAGAGCCAGAGCCCACCCCTTTAGACTTTAAAATGCAAGCTCACGAATTGCTTTGTCTGCATGGAAGCAGATGTTTTGTTTCCTGGACTTGACCATGATGGAAATGGTCAGCCAGGTTTTGCAAGCTTGGTGATGGGGCATTGCCTTTATGAATCAGCTTCTCTAAAGACCTTCCGTCCTGACAGAAAAGTT

Fln Alignment:

CL4055Contig1___EDMVFSQVFDEDRTKHTWYLFRSYVEDNRKTKWCSATSC*YSVGSVMGSGPYDVTSKCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQMQIVQIEKFSDKQCQPVSSLKFVTEAWLQIVEYRCVLSWTYAYSY
Q8W468_______________QDMINLLAPDKDKQKYTSYFVRSYVEDNRKTKWCPAPGCDYAVNFVVGSGNYDVNCRCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKMQTDDIEKLSDIQCQPESQLKFIIEAWLQIVECRRVLKWTYAYGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain