SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47956

Length: 2435 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene47956
GATAGAAAAGGGGTTGTGAGTTGTGAAAGGGCCTGTGAGATACCAGGCAACTGTGGACCTATGAATCAAATCAAACAGCTTCCCTTTGGAAAACGAGGCATACAATTAGTCTCTTCTTTCTATGAAAGAGGGTTACATATAATGAGTCTCTGAGGGTAATCAGGGAAGCAAATAGAGAGAGGGCTAGTGGGTGCATGTGATTATGTTATTCAGTTGGTTTTAACTTTGTCTCTGAAGGTAATCAGGGGAGCAAATAGAGAGTGTTAGTGGGTTCATCTGATTATGGAACAAAATGGAGAGCAGAATTCATCAGCAGGAGCTGCAAAATTTGAAGCACTTGACTTCAAGGGCCATCCTGCAGATAAGGCCACAACAGGAAGATGGTTACCTGCCGTTGTCATACTAGGAATTGAGATGTGTGAAAGAATGACAACTTTGGGCATATCTGTAAATTTGGTAACGTATTTGGAGAATACTATGCACCTTCCTAGTGCACAATCTGCAAATATTGTGACAAATTTTCTTGGAACTTCCTTCATTCTGTCCCTCTTTGGAGGATTTCTGGCTGATACCTTCTTAGGAAGATACTTGACGATTGCCATTTTTGCCTCAATTCAAAGCCTGGGAGTAGGGGTGTTGACAATCTCCACTGCATTACCACAGTTCAGACCTCATCCATGCATTCACAATGAACGATGTGAAGAAGCAGATGGTTTACAACTTTTTGTTCTCTACTTATCCCTGTATCTTATTGCACTGGGTACTGGAGGACTGAAATCAAGTGTATCAGGCTTTGGATCTGATCAGTTTGATGAAAATGATGATAAAGAAAGGAGTCAGATGGACTACTTCTTTAACCGATTCTTCTTCTGTATCAGTTTAGGATCTCTGCTTGCTGTGACAGTGCTTGTATACATCCAGGATAATGTGGGGAGGCCATGGGGTTATGGAATATGTGCTGTATGTATGATGTCAGCCATTCTCATATTCCTTGGAGGAACAAGGACGTATAGATTCAAGAAGGCCACTGGAAGTCCACTCACTCAGATTCTCCAAGTGGTTGTAGCATCTTGGAGGAATAGAAAGCTTAAATTGCCTGCAGATGTGGGACAATTGTATGATGGTAATAAGGCCTCTCTGTCCCACAACAGGGCACCCCATACAGATCAATTCCGGTGCCTGGACAGAGCTTCTATAATAGACTCATCGATGGAAGAGTCTTCCAATCCCAGCAGATGGAGGCTCTGCACACTAAGTAAAGTAGAAGAGGTGAAGATAATAATAAGAATGCTGCCCATCTGGGCAACCACAATAATGTTCTGGACCATCTATGCTCAGATGGTAACCTTCTCAGTAGAACAAGCATCCCACATGAACAGAAACATGGGAAACTTTCAGATACCGGCGGCCTCCATGACAGTATTTTTTGTGAGTGCAATCCTGGTGACAATAGCCCTCTATGACCGCATAATCATGCCCCTGGCAAGAGGTTGGACCGGTCACCAACAGGGTTTCACAACACTTCAGAAAATAGGGTTTGGACTCGCCTTGTCATGCCTTGCAATGGTTGCTGCAGCACTAACAGAAAAGAAACGTAGCCACGAGGGCAGAGCTCATGGGCTTTTAGACAAGCCCAATTCCTCAGTCCCCATGACTGTTTTCTATCTTGTTCCACAGTTTTTCCTGGTTGGCACTGGAGAAGCATTTATATACACAGGTCAGCTGGATTTCTTCATCAGAGAATCCCCTCCTGGCATGAAAACCATGAGCACTGGACTTTTCTTGAGCACGCTAGCCCTAGGGTTTTTCCTCAGTAGCCTTCTGGTCTCTATTGTTAACCATGTGACCACAAGCAGTTCTCGCCCAGGATGGCTCAGCAACAACTTGTATAGAGGAAGGCTTGACAAGTTCTACTGGCTGGTTGCAATCATGAGTTTGGTCAACTTTATCATATTCTTGATGTTTGCCAAGTGGTACACTTACACGGACACTGTGATGGGCAAACACTACAACTTTCAAGAACCAGAAAAGGCAGATGAAAAGGAGGCCAGACCTCCAAGCATATCATCCATTGATGAAAAGGAGAGCAGACCTCCAAGCAAATCATCCATTGAGTAACTCTTTGCCCATGATTCTTCACATAATAATCGGTATCATGAAGTTAATTGTGATTTTCAGAGTTGTTTTTTTTTTTGTCAAATATCTATGACTATGACTTCTTCCACTCATGAATTGTGAGATATATCTGCTTCATTATCCAGGCAATTCTTGTTAAAATATGAGCTATGCAACCTTCAATCTTGAGCCTGTCAAAACATAAGAGTTTGAGCTCTTACCCTCAAAGATAATTTATTGTAGTTCAAGTATGATAATAAAGTCTAATGGGCAGTGTCGTTTTCATATTTTCAATGTGGCAAATTGCAGTGAACTATGAT

Ace file of the UniGene sp_v3.0_unigene47956 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nitrate transporter [Prunus persica]	-	-	0.0	58%
FL-Next	sp=Nitrate transporter 1.4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Sma3	Nitrate transporter	-	-	1.599e-14	-

Source	Gene names
Sma3	At1g12110; At1g27040; At1g68570; At2g02040; At2g26690; At3g21670; At3g54140; At5g01180; B1026C12.10; B1065G12.20; B1144D11.1; B1267B06.37-1; B1377B10.10; CHL1; F14H20.11; F24B22.100; F24J5.19; F7J8_160; GSVIVT00000089001; GSVIVT00009628001; GSVIVT00014519

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to herbicide	GO:0009635	Biological Process	-
Sma3	response to nitrate	GO:0010167	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	nitrate transport	GO:0015706	Biological Process	-
Sma3	nitrate assimilation	GO:0042128	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G26690.1	Major facilitator superfamily protein chr2:11347347-11350916 REVERSE LENGTH=577	58%
RefSeq	Arabidopsis thaliana	NP_850084.1	nitrate transporter 1.4 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002303512.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SZY4

Fln msg: your sequence is longer than subject: 612 - 577

Fln protein: MEQNGEQNSSAGAAKFEALDFKGHPADKATTGRWLPAVVILGIEMCERMTTLGISVNLVTYLENTMHLPSAQSANIVTNFLGTSFILSLFGGFLADTFLGRYLTIAIFASIQSLGVGVLTISTALPQFRPHPCIHNERCEEADGLQLFVLYLSLYLIALGTGGLKSSVSGFGSDQFDENDDKERSQMDYFFNRFFFCISLGSLLAVTVLVYIQDNVGRPWGYGICAVCMMSAILIFLGGTRTYRFKKATGSPLTQILQVVVASWRNRKLKLPADVGQLYDGNKASLSHNRAPHTDQFRCLDRASIIDSSMEESSNPSRWRLCTLSKVEEVKIIIRMLPIWATTIMFWTIYAQMVTFSVEQASHMNRNMGNFQIPAASMTVFFVSAILVTIALYDRIIMPLARGWTGHQQGFTTLQKIGFGLALSCLAMVAAALTEKKRSHEGRAHGLLDKPNSSVPMTVFYLVPQFFLVGTGEAFIYTGQLDFFIRESPPGMKTMSTGLFLSTLALGFFLSSLLVSIVNHVTTSSSRPGWLSNNLYRGRLDKFYWLVAIMSLVNFIIFLMFAKWYTYTDTVMGKHYNFQEPEKADEKEARPPSISSIDEKESRPPSKSSIE*

Protein Length: 613

Fln nts: GATAGAAAAGGGGTTGTGAGTTGTGAAAGGGCCTGTGAGATACCAGGCAACTGTGGACCTATGAATCAAATCAAACAGCTTCCCTTTGGAAAACGAGGCATACAATTAGTCTCTTCTTTCTATGAAAGAGGGTTACATATAATGAGTCTCTGAGGGTAATCAGGGAAGCAAATAGAGAGAGGGCTAGTGGGTGCATGTGATTATGTTATTCAGTTGGTTTTAACTTTGTCTCTGAAGGTAATCAGGGGAGCAAATAGAGAGTGTTAGTGGGTTCATCTGATT_-_ATGGAACAAAATGGAGAGCAGAATTCATCAGCAGGAGCTGCAAAATTTGAAGCACTTGACTTCAAGGGCCATCCTGCAGATAAGGCCACAACAGGAAGATGGTTACCTGCCGTTGTCATACTAGGAATTGAGATGTGTGAAAGAATGACAACTTTGGGCATATCTGTAAATTTGGTAACGTATTTGGAGAATACTATGCACCTTCCTAGTGCACAATCTGCAAATATTGTGACAAATTTTCTTGGAACTTCCTTCATTCTGTCCCTCTTTGGAGGATTTCTGGCTGATACCTTCTTAGGAAGATACTTGACGATTGCCATTTTTGCCTCAATTCAAAGCCTGGGAGTAGGGGTGTTGACAATCTCCACTGCATTACCACAGTTCAGACCTCATCCATGCATTCACAATGAACGATGTGAAGAAGCAGATGGTTTACAACTTTTTGTTCTCTACTTATCCCTGTATCTTATTGCACTGGGTACTGGAGGACTGAAATCAAGTGTATCAGGCTTTGGATCTGATCAGTTTGATGAAAATGATGATAAAGAAAGGAGTCAGATGGACTACTTCTTTAACCGATTCTTCTTCTGTATCAGTTTAGGATCTCTGCTTGCTGTGACAGTGCTTGTATACATCCAGGATAATGTGGGGAGGCCATGGGGTTATGGAATATGTGCTGTATGTATGATGTCAGCCATTCTCATATTCCTTGGAGGAACAAGGACGTATAGATTCAAGAAGGCCACTGGAAGTCCACTCACTCAGATTCTCCAAGTGGTTGTAGCATCTTGGAGGAATAGAAAGCTTAAATTGCCTGCAGATGTGGGACAATTGTATGATGGTAATAAGGCCTCTCTGTCCCACAACAGGGCACCCCATACAGATCAATTCCGGTGCCTGGACAGAGCTTCTATAATAGACTCATCGATGGAAGAGTCTTCCAATCCCAGCAGATGGAGGCTCTGCACACTAAGTAAAGTAGAAGAGGTGAAGATAATAATAAGAATGCTGCCCATCTGGGCAACCACAATAATGTTCTGGACCATCTATGCTCAGATGGTAACCTTCTCAGTAGAACAAGCATCCCACATGAACAGAAACATGGGAAACTTTCAGATACCGGCGGCCTCCATGACAGTATTTTTTGTGAGTGCAATCCTGGTGACAATAGCCCTCTATGACCGCATAATCATGCCCCTGGCAAGAGGTTGGACCGGTCACCAACAGGGTTTCACAACACTTCAGAAAATAGGGTTTGGACTCGCCTTGTCATGCCTTGCAATGGTTGCTGCAGCACTAACAGAAAAGAAACGTAGCCACGAGGGCAGAGCTCATGGGCTTTTAGACAAGCCCAATTCCTCAGTCCCCATGACTGTTTTCTATCTTGTTCCACAGTTTTTCCTGGTTGGCACTGGAGAAGCATTTATATACACAGGTCAGCTGGATTTCTTCATCAGAGAATCCCCTCCTGGCATGAAAACCATGAGCACTGGACTTTTCTTGAGCACGCTAGCCCTAGGGTTTTTCCTCAGTAGCCTTCTGGTCTCTATTGTTAACCATGTGACCACAAGCAGTTCTCGCCCAGGATGGCTCAGCAACAACTTGTATAGAGGAAGGCTTGACAAGTTCTACTGGCTGGTTGCAATCATGAGTTTGGTCAACTTTATCATATTCTTGATGTTTGCCAAGTGGTACACTTACACGGACACTGTGATGGGCAAACACTACAACTTTCAAGAACCAGAAAAGGCAGATGAAAAGGAGGCCAGACCTCCAAGCATATCATCCATTGATGAAAAGGAGAGCAGACCTCCAAGCAAATCATCCATTGAGTAA___CTCTTTGCCCATGATTCTTCACATAATAATCGGTATCATGAAGTTAATTGTGATTTTCAGAGTTGTTTTTTTTTTTGTCAAATATCTATGACTATGACTTCTTCCACTCATGAATTGTGAGATATATCTGCTTCATTATCCAGGCAATTCTTGTTAAAATATGAGCTATGCAACCTTCAATCTTGAGCCTGTCAAAACATAAGAGTTTGAGCTCTTACCCTCAAAGATAATTTATTGTAGTTCAAGTATGATAATAAAGTCTAATGGGCAGTGTCGTTTTCATATTTTCAATGTGGCAAATTGCAGTGAACTATGAT

Fln Alignment:

CL3262Contig1___EALDFKGHPADKATTGRWLPAVVILGIEMCERMTTLGISVNLVTYLENTMHLPSAQSANIVTNFLGTSFILSLFGGFLADTFLGRYLTIAIFASIQSLGVGVLTISTALPQFRPHPCIHNERCEEADGXXXXXXXXXXXXXXLGTGGLKSSVSGFGSDQFDENDDKERSQMDYFFNRFFFCISLGSLLAVTVLVYIQDNVGRPWGYGICAVCMMSAILIFLGGTRTYRFKKATGSPLTQILQVVVASWRNRKLKLPADVGQLYDGNKASLSHNRAPHTDQFRCLDRASII-----DSSMEESSNPSRWRLCTLSKVEEVKIIIRMLPIWATTIMFWTIYAQMVTFSVEQASHMNRNMGNFQIPAASMTVFFVSAILVTIALYDRIIMPLARGWTGHQQGFTTLQKIGFGLALSCLAMVAAALTEKKRSHEGRAHGLLDKPNSSVPMTVFYLVPQFFLVGTGEAFIYTGQLDFFIRESPPGMKTMSTGLFLSTLALGFFLSSLLVSIVNHVTTSSSRPGWLSNNLYRGRLDKFYWLVAIMSLVNFIIFLMFAKWYTYT
Q9SZY4_______________DAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPPTCHHGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGI---RIEHTDQFHLLDKAAIVAEGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKG-KPGFSSLQRIAIGLVLSTAGMAAAALVEQKRLSVAKS-----SSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYFYWLLVILSGINFVVYIICALWFKPT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain