SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47936

Length: 2229 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene47936
GGCGCGAGAAGTAATAGTGCATTGGTTTAATGGTAAGCGTTTTTTTCCAGATTTCTTCCCTTCTGGCATGTTGGCATTCCTGTTCTCAGTTCTTATTATCTGAATTTTGCTGTTAATTCTCTATGAATAATCTGAGATCCTTGTGAGAGCTACTGAGATATAATTCATAGTCTGAAAGAATCAGTGATGGGATTCGAACTGCTGCAGCTGTGGAGGAAATTAGGAGGGTATCTTTGAGGGGTGGGATTCGATCTGTTGCTGCAGCCGTGGAAGAAATCAGGAGGGTATCTTCGTTGAGGGTACCAAGAGAAGAAAATAAGTCCAATCAAGGAAAAGCAAGGTCTGTCAAGTTGTGGCAACACGGCTATTATCAGAAATTTTTTCCTGTTCCATCTCCATGACAGCAGAAGGAGGAGGTTTCTGCGCCGTAGGAACGCTGTTGGTGCACTAGAGAGGACTACGTCGCCGCACGGCGGAAGAGGAGCTTTGCCCTCGGAAGGCGGAAGCCCATCTGATCTCCAGTTTCTTGCAGGAGGCGGCCGTCAGCTTGCCCTTTTCTGCCTCGCCCATCCATTTCTTCTGAGCGAAGAAGTTTGGGAGAGGGAGAGGTAGTTAGGCGTCCATCAATTGCTCATATTATTTGTTAACAACCATGTTGACCATAAAAAGATGCCCCACTATTCTATCTAACTACCAGGAGGGTTCTGAAGGGCTGGGCTGCGGCCGTAATTGTTTAGGCCAGTGCTGTGTTCCAGGCTCGAAGTTGCCTTTGTATACCTTCAAGAGAAGGCACACCATTGCTGGAGAGAAACACGTAGATAATGATGTTAAATTGACAGATGTTCCTTCCCTTGACAGTCTGCTTCTTGGGCTGTGGGAGGAAAGGATGCAGAGGGGTTTGTTCCGCTATGATGTTACTATTTGTGAAACCAAGGTCATCCCTGGTAATTATGGCTTCATTGCTCAGCTGAATGAAGGGCGCCATCTTAAAAAACGTCCCACTGAATTTCGAGTGGACAAGGTGCTGCAGGACTTTGATCCCTGTAAATTCAACTTCACTAAAGTAGGGCAGGAAGAGGTGCTCTTCCGTTTTGAAGAAAGTGAGGAAGAGAAAGTTCAGTACTTGGAAAAGGCCCCTGTCTTGGACAGTCCAAATGTGATTGCTATCAATGTGAGTCCAATTGAATATGGGCATGTGCTTCTCGTGCCAAGAGTGTTGGACTGCTTACCCCAACGCATCGACCATGATAGCTTACTGTTAGCTCTGCATTTGGCTGTGGAGGCTGGCAACCCATCTTTTCGCCTTGGCTACAATAGCCTGGGAGCATTTGCAACTATAAACCATCTGCACTTCCAGGCTTATTACTTGGCTCGTCCTTTCCCTGTTGAAAAAGCACCAACGAAAAGAGTACCATGGAAGTCTGAGAAAACTGGGGTCAAGATATTTGAACTCTGCAACTACCCTGTTAGAGGCCTAGTTTTTGAAGGGGGTAATACTTTGGAAGACCTCTGTAATGCCGTTGGCAGCTCCTGCATCTGTCTACAAGATAACAACATACCATACAACGTGCTCATTGCAGATTGCGGCAAAAGAGTTTTTCTGTTCCCTCAGTGCTATGCAGAGAAACAAGCTTTGGGAGAAGTGAACCAAGAGATATTAGACACTCAAGTTAATCCAGCTGTGTGGGAAATCAGTGGCCACATGGTTTTGAAGAGGAAGCAAGACTTTGACAGGGCTTTTGAGGATTATGCATGGAAATTACTTGCTGAAGTCTCTTTGTCAGAGGAAAGATTTGAAGAAGTTAAAGCTTATATTTTGGAAGCAGCAGCTACTGAGGAGGTGCAAGTAGAAGAAGAGGAACATGCTGATATTGTTGTGGAAGATGGGGTTCCTCTTTATGATTCCTCGAAGAATACCATAATGCCCCTATGCACATGAATGAAGGATTCGTGCCACCGTGATCGAACTATTTACTTTCTGTTTTCAAAACTATCATGTTAGTAGAACCTTGTCTATATGCTACATATTTCATAGCTATCATCTTAGCAGAACCTTATCTATATGCTTCATATTGCATATAAAATGCTGGTTGGACATAGCATATCTATATTCATATATTTTCTTCTTGTTTCTTTGTATACAAGGATATGGAAATTTAGTGTTTTGGCTGTTATTTATGTTAAGACTTGTTATGGGTTCTTTTATCTTGTTGTTGGAAAATAAACTAT

Ace file of the UniGene sp_v3.0_unigene47936 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	VTC2-like protein n=1 Tax=Malus x domestica RepID=C0LQ97_MALDO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G26850.1	" VTC2 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltra	67%
RefSeq	Arabidopsis thaliana	NP_567759.1	GDP-L-galactose phosphorylase [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002298816.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLJ1

Fln msg:

Fln protein: MLTIKRCPTILSNYQEGSEGLGCGRNCLGQCCVPGSKLPLYTFKRRHTIAGEKHVDNDVKLTDVPSLDSLLLGLWEERMQRGLFRYDVTICETKVIPGNYGFIAQLNEGRHLKKRPTEFRVDKVLQDFDPCKFNFTKVGQEEVLFRFEESEEEKVQYLEKAPVLDSPNVIAINVSPIEYGHVLLVPRVLDCLPQRIDHDSLLLALHLAVEAGNPSFRLGYNSLGAFATINHLHFQAYYLARPFPVEKAPTKRVPWKSEKTGVKIFELCNYPVRGLVFEGGNTLEDLCNAVGSSCICLQDNNIPYNVLIADCGKRVFLFPQCYAEKQALGEVNQEILDTQVNPAVWEISGHMVLKRKQDFDRAFEDYAWKLLAEVSLSEERFEEVKAYILEAAATEEVQVEEEEHADIVVEDGVPLYDSSKNTIMPLCT*

Protein Length: 430

Fln nts: GGCGCGAGAAGTAATAGTGCATTGGTTTAATGGTAAGCGTTTTTTTCCAGATTTCTTCCCTTCTGGCATGTTGGCATTCCTGTTCTCAGTTCTTATTATCTGAATTTTGCTGTTAATTCTCTATGAATAATCTGAGATCCTTGTGAGAGCTACTGAGATATAATTCATAGTCTGAAAGAATCAGTGATGGGATTCGAACTGCTGCAGCTGTGGAGGAAATTAGGAGGGTATCTTTGAGGGGTGGGATTCGATCTGTTGCTGCAGCCGTGGAAGAAATCAGGAGGGTATCTTCGTTGAGGGTACCAAGAGAAGAAAATAAGTCCAATCAAGGAAAAGCAAGGTCTGTCAAGTTGTGGCAACACGGCTATTATCAGAAATTTTTTCCTGTTCCATCTCCATGACAGCAGAAGGAGGAGGTTTCTGCGCCGTAGGAACGCTGTTGGTGCACTAGAGAGGACTACGTCGCCGCACGGCGGAAGAGGAGCTTTGCCCTCGGAAGGCGGAAGCCCATCTGATCTCCAGTTTCTTGCAGGAGGCGGCCGTCAGCTTGCCCTTTTCTGCCTCGCCCATCCATTTCTTCTGAGCGAAGAAGTTTGGGAGAGGGAGAGGTAGTTAGGCGTCCATCAATTGCTCATATTATTTGTTAACAACC_-_ATGTTGACCATAAAAAGATGCCCCACTATTCTATCTAACTACCAGGAGGGTTCTGAAGGGCTGGGCTGCGGCCGTAATTGTTTAGGCCAGTGCTGTGTTCCAGGCTCGAAGTTGCCTTTGTATACCTTCAAGAGAAGGCACACCATTGCTGGAGAGAAACACGTAGATAATGATGTTAAATTGACAGATGTTCCTTCCCTTGACAGTCTGCTTCTTGGGCTGTGGGAGGAAAGGATGCAGAGGGGTTTGTTCCGCTATGATGTTACTATTTGTGAAACCAAGGTCATCCCTGGTAATTATGGCTTCATTGCTCAGCTGAATGAAGGGCGCCATCTTAAAAAACGTCCCACTGAATTTCGAGTGGACAAGGTGCTGCAGGACTTTGATCCCTGTAAATTCAACTTCACTAAAGTAGGGCAGGAAGAGGTGCTCTTCCGTTTTGAAGAAAGTGAGGAAGAGAAAGTTCAGTACTTGGAAAAGGCCCCTGTCTTGGACAGTCCAAATGTGATTGCTATCAATGTGAGTCCAATTGAATATGGGCATGTGCTTCTCGTGCCAAGAGTGTTGGACTGCTTACCCCAACGCATCGACCATGATAGCTTACTGTTAGCTCTGCATTTGGCTGTGGAGGCTGGCAACCCATCTTTTCGCCTTGGCTACAATAGCCTGGGAGCATTTGCAACTATAAACCATCTGCACTTCCAGGCTTATTACTTGGCTCGTCCTTTCCCTGTTGAAAAAGCACCAACGAAAAGAGTACCATGGAAGTCTGAGAAAACTGGGGTCAAGATATTTGAACTCTGCAACTACCCTGTTAGAGGCCTAGTTTTTGAAGGGGGTAATACTTTGGAAGACCTCTGTAATGCCGTTGGCAGCTCCTGCATCTGTCTACAAGATAACAACATACCATACAACGTGCTCATTGCAGATTGCGGCAAAAGAGTTTTTCTGTTCCCTCAGTGCTATGCAGAGAAACAAGCTTTGGGAGAAGTGAACCAAGAGATATTAGACACTCAAGTTAATCCAGCTGTGTGGGAAATCAGTGGCCACATGGTTTTGAAGAGGAAGCAAGACTTTGACAGGGCTTTTGAGGATTATGCATGGAAATTACTTGCTGAAGTCTCTTTGTCAGAGGAAAGATTTGAAGAAGTTAAAGCTTATATTTTGGAAGCAGCAGCTACTGAGGAGGTGCAAGTAGAAGAAGAGGAACATGCTGATATTGTTGTGGAAGATGGGGTTCCTCTTTATGATTCCTCGAAGAATACCATAATGCCCCTATGCACATGA___ATGAAGGATTCGTGCCACCGTGATCGAACTATTTACTTTCTGTTTTCAAAACTATCATGTTAGTAGAACCTTGTCTATATGCTACATATTTCATAGCTATCATCTTAGCAGAACCTTATCTATATGCTTCATATTGCATATAAAATGCTGGTTGGACATAGCATATCTATATTCATATATTTTCTTCTTGTTTCTTTGTATACAAGGATATGGAAATTTAGTGTTTTGGCTGTTATTTATGTTAAGACTTGTTATGGGTTCTTTTATCTTGTTGTTGGAAAATAAACTAT

Fln Alignment:

CL2839Contig1___MLTIKRCPTILSNYQEGSEGLGCGRNCLGQCCVPGSKLPLYTFKRRHTIAGEKHVDNDVKLTDVPSLDSLLLGLWEERMQRGLFRYDVTICETKVIPGNYGFIAQLNEGRHLKKRPTEFRVDKVLQDFDPCKFNFTKVGQXXXXXXXXXXXXEKVQYLEKAPVLDSPNVIAINVSPIEYGHVLLVPRVLDCLPQRIXXXXXXXXXXXAVEAGNPSFRLGYNSLGAFATINHLHFQAYYLARPFPVEKAPTKRVPWKSEKTGVKIFELCNYPVRGLVFEGGNTLEDLCNAVGSSCICLQDNNIPYNVLIADCGKRVFLFPQCYAEKQALGEVNQEILDTQVNPAVWEISGHMVLKRKQDFDRAFEDYAWKLLAEVSLSEERFEEVKAYILXXXXXXXXXXXXXXXADIVVEDGVPLYDSSK---NTIMPLC
B8LLJ1_______________MLTIKRCPTILSNYQEGSEGLGCGRNCLGQCCVPGSKLPLYTFKRRHTIVGEKHVDNDVKLADIPSLDSLLLGLWEERMQRGLFRYDVTICETKVIPGNYGFIAQLNEGRHLKKRPTEFRVDKVQQDFDPSKFNFTKVGQEEVLFRFEESGEDKVQYLEKAPVLDSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDHDSLLLALHLAAEARNPSFRLGYNSLGAFATINHLHFQAYYLALPFPVEKAPTKRVPWKSEKAGVKIFELYNYPVRGLVFEGGNTLEDLSNAVGSSCICLQDNNIPYNVLVADCGKRVFLFPQCYAEKQALGEVDQEILDTQVNPAVWEISGHMVLKRKQDFDRASEDYAWKLLAEVSLSEERFEEVKAYILEAAATGQVQVVEEEQADIVEEDEIPLYDSSKNNHNAPMPLC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain