SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47812

Length: 1393 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene47812

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	DEAD-box ATP-dependent RNA helicase 45	-	-	3.944e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	2.512e-12	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	2.512e-12	%
Sma3	Lipopolysaccharide biosynthesis	00540	2.512e-12	%
Sma3	Folate biosynthesis	00790	2.512e-12	%
Sma3	Metabolic pathways	01100	2.512e-12	%

Source	Gene names
Sma3	At1g20920; At3g09620; B1114D08.16-1; B1156H12.12-1; B1156H12.12-2; CHLREDRAFT_118630; CHLREDRAFT_136917; ER68; F11F8_21; F9H16.10; GSVIVT00003606001; GSVIVT00019684001; GSVIVT00036305001; LOC_Os01g36860; LOC_Os07g20580; LOC_Os08g05810; LOC_Os08g06344; MIC

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	rRNA processing	GO:0006364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20920.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr1:7285342-7288842 FORWARD LENGTH=1166	66%
RefSeq	Arabidopsis thaliana	NP_001077571.1	DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002307002.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ7

Fln msg: your sequence is shorter than subject: 399 - 504

Fln protein: LFKELLKHGYPCLSLHGAKDQTDRESTISDFKKNVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGVAITFISEEEERYAPDLVKALELSEQPIPEDLKKMADGFMAKVSQGTEHAHGTGYGGSGFKFNEEEEEARRAAKKAQGREYGFEEYDKSDSEDEDEGVRKSGGDIAQAAGLGPAAAMAAATRATMTSGPLLLPNSGALSTAGITTGALPGETWVGGGPNVVGHPGTMGTPAMSVSGLPGAYPIPSDAAARAAALAAAMNLQHNLAKIQKDALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYYPPGKIAGPGERKLYLFIEGPTESSVKKAKAEVKRVLEDYTAQSLSLPGAVQPGKYSVL*

Protein Length: 400

Fln nts: TCTGTTCAAGGAATTGCTTAAACATGGCTATCCATGTCTTTCTCTTCATGGGGCCAAGGACCAGACAGATCGGGAGTCTACAATTTCTGACTTTAAAAAAAATGTCTGTAATTTGTTAATTGCCACTAGTGTTGCAGCAAGGGGTTTAGATGTGAAGGAGCTTGAGCTTGTCGTAAACTTTGATGCGCCGAACCACTATGAAGATTATGTACACAGGGTGGGGCGCACTGGAAGAGCGGGTCGCAAGGGTGTTGCTATCACCTTCATTTCTGAGGAGGAAGAAAGATATGCTCCTGACCTTGTAAAGGCATTGGAATTATCAGAACAACCTATACCTGAGGATCTGAAAAAGATGGCTGATGGGTTTATGGCTAAAGTGAGTCAAGGGACTGAGCATGCTCATGGCACTGGCTATGGTGGCAGTGGCTTCAAGTTCAACGAAGAAGAAGAGGAGGCTAGGAGAGCTGCAAAGAAAGCTCAAGGAAGAGAGTATGGGTTTGAAGAATATGACAAATCTGACTCAGAAGATGAAGATGAAGGAGTACGAAAATCAGGAGGTGACATTGCACAAGCTGCAGGACTTGGGCCAGCTGCTGCTATGGCTGCAGCAACGAGAGCTACCATGACTTCAGGGCCATTATTACTTCCCAACTCTGGAGCACTCTCAACTGCAGGAATAACAACTGGGGCTCTCCCTGGAGAAACTTGGGTAGGAGGGGGACCAAATGTTGTGGGCCATCCAGGGACAATGGGGACACCGGCAATGTCTGTATCTGGTCTTCCGGGTGCCTATCCTATTCCGAGTGATGCAGCTGCAAGAGCAGCAGCCCTAGCCGCTGCTATGAATCTACAGCATAATCTAGCAAAGATACAGAAAGATGCTTTGCCTGAACACTATGAAGCTGAATTGGAAATCAATGATTTCCCACAAAATGCACGGTGGAAGGTTACTCACAAGGAGACCTTGGGACCTATTTCAGAATGGACAGGAGCTGCAATTACCACAAGAGGGCAATATTATCCTCCCGGGAAAATTGCTGGACCTGGGGAACGTAAACTTTATTTATTTATTGAAGGCCCAACTGAATCATCAGTCAAGAAAGCCAAAGCTGAGGTGAAACGAGTCTTGGAAGATTATACTGCACAGTCTCTTTCTTTGCCAGGTGCAGTTCAACCTGGGAAGTATTCTGTTCTATGA___GGTTTTACGATGGAATGTTCTTCTGATCAAATTCATGGCTATTATCAGTGGATTGATGAGATTTTTCTATGGATCAGTCGATCCTGTCATTAACAACTGTAAATGTAGAACTTTTTGACAGGTAAGATTACTGGCTAGATTTTTAAGAGGATGTAGCATGAATTCAGTTATATTTACAGTTCCATTATAATTCTG

Fln Alignment:

CL850Contig1___KELLKHGYPCLSLHGAKDQTDRESTISDFKKNVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGVAITFISEEEERYAPDLVKALELSEQPIPEDLKKMADGFMAKVSQGTEHAHGTGYG
B8LKZ7_______________RKLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSMEDYVHRIGRTGRAGAKGTAYTYFTAANARFARDLIKILEEAGQSISPSLAEMGRSSAASGGYGGFRDRGRGSG

SSRs (tot: 1)

Start position	End position	Sequence	Length
1059	1072	TTTA TTTA TTTA TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain