SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47779

Length: 2034 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene47779
GAGATCTTTGTATTACCACCCTCTGACTAATTTGACAGGAAGAATGCATTCTGAGCCTAGTAGATTGCCAGATGGAAGTTGGAGGGCAGAGGGACGAACTATGCAGAATTCTTATGTGGAATACTCAAAACTATTTAGCAAAAGCCCAAACTGGGGTGAAGTTAAAACAACTGATGTTAGAAGTAGAACCTCTGAGAGCAAGGATCCTGAAGTTCTAGTCAAATCACTGCCACAACAAGATGATCGACCTTCTCAAGAGGTCCAGTTGACAAAGGTTAAGGTAGATGGAGTAACACATACTGTGCATGCAAATTCTACAGGCAATGCAGGAGGGATCAAAAGCAGCGGTGCAGAAGGCTCATCTGTATTTGCAAAGCCTCCAAATGCATCTGAAGGCAGGAGACGGCATCAGCGGCTTATTCTTCAGGAAGATTCGGATAATGAAGATGACTTCCCTGTAAGTGTGGAAATACGAGAATTGCCTAAGAGAAAACCTCAAGTTAATATGTGGGCATCTATTGCAAAGATGGATATTCATCCTGCCAGAGAGGACCAAAAAGGTGATCTTGTAGATGAAGTTACCCCTGGAAAGCAGGTCAAACTGACTAACAATGTTGCAATGAACCAACCAGTTCGCAAGAGCTCAAGGATACCTAAGAAACGGGTATTGTATGGTGCATATGATATGGATGATGATGCTGAGAGAGCATTGCAGAATAAAAGCTCAAGGACCACAAAGAAATGTGTTCGAAATGGTGAGTACGATGAGGATGAGGAATGTGAAACACTTCAGCTCTGAAGTTCAAGGATACCCAAAAAGCGAATGCTGGATGTTGAATATGAAGAGGATGTCCAAGTGCAGCAGCATTAAAGAAGACGGAAGAGGTCAAAATATCATACTGATTTTGAACATTTGTATTATGAGGATGCTGAAGAAGCTGCTGCATGGAGGGATAAAGATATGGGAAAGACAGATGTTGATCATGAAGGAATGAAGAATAGGAGTGAAAAAAAACAAGAAGTTGGAAATTCAATTGTTGAAGATGACAAGGAGGTTCCTCTTACTGCACGGCAAAGGACCATGCAGTCATGCAAGGATGCTGGTTCAGAAGTAGGAGCAAATCTGATTGAATTTCCAGGAGGATTGCCTCAGACCACTCGTAGAAAACGGAAAGAAATATTATCAGAGGTGGAACAGCAGCTGAAGAAAACTGAAGCAGCTCAGAAACGTAAGCTGCAATTAGAGAAGGCTGCAAATGCAGCTCAGGCTGAGGCCATCAAGAAGATTCTGGGTAAGGACTCTTCAAAAAAGAAACGAGCAGACAAGCTGCAAAAACAAAGAGATGCAATGGCACAGAGGAAGGTTGCTAGTGATATGTCGCTTGCTTCAAATGGTGTGAGATGGGTTATGGGACCATCCGGCACAGTTGTTACATTTTCTGAGAATACAGGGCTTCCAAGCATATTCAATAACCCATGCAGGTATCCTCCGCCTCGTGAGAAATGTGCTGGGCCATTTTGTAACAACACATATAAATACAGAGATTCTAGAACTAATCTCCCTCTTTGCAGTCTTCAATGCTACCGTGCTATGCATACTGTGTAACTTACTGTCTCTTCCCATCAGTGATGGATAATTTATTGCTATGTTTTCTCTGTACTCTCAAGCGTACAGATGGACAGCAGTTGTTCAGACTGCAATGGGATCGTAATGATTTTTTGAGATCTGGTGGCTGCAAGTGAAAAATACACGGTGAACTAAAATTAAAGAGGTTGGAAACATGTTTATTCCACTACACCTTGAGGACCATGTCGAGGTTCACAACTACAGAAGACATTTGAACCGTGACCTATCATGTTGTACCCTTATTCTCACAAAGAAGTTTAACTTTGCAAACCATTGGAAGAACTAGTCTTGTGCTCACAAAAGCCAAGTGAAACTCTTGACAACTCATGTATAAGTGGATTTAGTAAGTATGAAGAATTTATCTCTATGTTTGATATATAAGTTTTAGACTTGTTCATGTTTCTTCC

Ace file of the UniGene sp_v3.0_unigene47779 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana] dbj\|BAC42342.1\| unknown protein [Arabidopsis thaliana] gb\|AEE33398.1\| HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]	-	-	0.0	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%

Source	Gene names
Sma3	At1g56460; At1g56460/F13N6_4; At3g06660; F13N6.4; F3E22.21; GSVIVT00028124001; GSVIVT00033131001; LOC_Os03g59680; OSJNBb0033J23.10; Os03g0811500; OsI_14023; OsJ_13069; POPTRDRAFT_564395; POPTRDRAFT_570710; POPTRDRAFT_673850; POPTRDRAFT_678389; RCOM_100044

Source	GOs	Term	Type	e value	Identity
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	0.0	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	PAPA-1-like conserved region	IPR006880	-	-
Sma3	Zinc finger, HIT-type	IPR007529	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PS52

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 521 - 407

Fln protein: MHSEPSRLPDGSWRAEGRTMQNSYVEYSKLFSKSPNWGEVKTTDVRSRTSESKDPEVLVKSLPQQDDRPSQEVQLTKVKVDGVTHTVHANSTGNAGGIKSSGAEGSSVFAKPPNASEGRRRHQRLILQEDSDNEDDFPVSVEIRELPKRKPQVNMWASIAKMDIHPAREDQKGDLVDEVTPGKQVKLTNNVAMNQPVRKSSRIPKKRVLYGAYDMDDDAERALQNKSSRTTKKCVRNGEYDEDEECETLQL*SSRIPKKRMLDVEYEEDVQVQQH*RRRKRSKYHTDFEHLYYEDAEEAAAWRDKDMGKTDVDHEGMKNRSEKKQEVGNSIVEDDKEVPLTARQRTMQSCKDAGSEVGANLIEFPGGLPQTTRRKRKEILSEVEQQLKKTEAAQKRKLQLEKAANAAQAEAIKKILGKDSSKKKRADKLQKQRDAMAQRKVASDMSLASNGVRWVMGPSGTVVTFSENTGLPSIFNNPCRYPPPREKCAGPFCNNTYKYRDSRTNLPLCSLQCYRAMHTV*

Protein Length: 522

Fln nts: GAGATCTTTGTATTACCACCCTCTGACTAATTTGACAGGAAGA_-_ATGCATTCTGAGCCTAGTAGATTGCCAGATGGAAGTTGGAGGGCAGAGGGACGAACTATGCAGAATTCTTATGTGGAATACTCAAAACTATTTAGCAAAAGCCCAAACTGGGGTGAAGTTAAAACAACTGATGTTAGAAGTAGAACCTCTGAGAGCAAGGATCCTGAAGTTCTAGTCAAATCACTGCCACAACAAGATGATCGACCTTCTCAAGAGGTCCAGTTGACAAAGGTTAAGGTAGATGGAGTAACACATACTGTGCATGCAAATTCTACAGGCAATGCAGGAGGGATCAAAAGCAGCGGTGCAGAAGGCTCATCTGTATTTGCAAAGCCTCCAAATGCATCTGAAGGCAGGAGACGGCATCAGCGGCTTATTCTTCAGGAAGATTCGGATAATGAAGATGACTTCCCTGTAAGTGTGGAAATACGAGAATTGCCTAAGAGAAAACCTCAAGTTAATATGTGGGCATCTATTGCAAAGATGGATATTCATCCTGCCAGAGAGGACCAAAAAGGTGATCTTGTAGATGAAGTTACCCCTGGAAAGCAGGTCAAACTGACTAACAATGTTGCAATGAACCAACCAGTTCGCAAGAGCTCAAGGATACCTAAGAAACGGGTATTGTATGGTGCATATGATATGGATGATGATGCTGAGAGAGCATTGCAGAATAAAAGCTCAAGGACCACAAAGAAATGTGTTCGAAATGGTGAGTACGATGAGGATGAGGAATGTGAAACACTTCAGCTCTGAAGTTCAAGGATACCCAAAAAGCGAATGCTGGATGTTGAATATGAAGAGGATGTCCAAGTGCAGCAGCATTAAAGAAGACGGAAGAGGTCAAAATATCATACTGATTTTGAACATTTGTATTATGAGGATGCTGAAGAAGCTGCTGCATGGAGGGATAAAGATATGGGAAAGACAGATGTTGATCATGAAGGAATGAAGAATAGGAGTGAAAAAAAACAAGAAGTTGGAAATTCAATTGTTGAAGATGACAAGGAGGTTCCTCTTACTGCACGGCAAAGGACCATGCAGTCATGCAAGGATGCTGGTTCAGAAGTAGGAGCAAATCTGATTGAATTTCCAGGAGGATTGCCTCAGACCACTCGTAGAAAACGGAAAGAAATATTATCAGAGGTGGAACAGCAGCTGAAGAAAACTGAAGCAGCTCAGAAACGTAAGCTGCAATTAGAGAAGGCTGCAAATGCAGCTCAGGCTGAGGCCATCAAGAAGATTCTGGGTAAGGACTCTTCAAAAAAGAAACGAGCAGACAAGCTGCAAAAACAAAGAGATGCAATGGCACAGAGGAAGGTTGCTAGTGATATGTCGCTTGCTTCAAATGGTGTGAGATGGGTTATGGGACCATCCGGCACAGTTGTTACATTTTCTGAGAATACAGGGCTTCCAAGCATATTCAATAACCCATGCAGGTATCCTCCGCCTCGTGAGAAATGTGCTGGGCCATTTTGTAACAACACATATAAATACAGAGATTCTAGAACTAATCTCCCTCTTTGCAGTCTTCAATGCTACCGTGCTATGCATACTGTGTAACTTACTGTCTCTTCCCATCAGTGATGGATAATTTATTGCTATGTTTTCTCTGTACTCTCAAGCGTACAGATGGACAGCAGTTGTTCAGACTGCAATGGGATCGTAATGATTTTTTGAGATCTGGTGGCTGCAAGTGAAAAATACACGGTGAACTAAAATTAAAGAGGTTGGAAACATGTTTATTCCACTACACCTTGAGGACCATGTCGAGGTTCACAACTACAGAAGACATTTGAACCGTGACCTATCATGTTGTACCCTTATTCTCACAAAGAAGTTTAACTTTGCAAACCATTGGAAGAACTAGTCTTGTGCTCACAAAAGCCAAGTGAAACTCTTGACAACTCATGTATAAGTGGATTTAGTAAGTATGAAGAATTTATCTCTATGTTTGATATATAAGTTTTAGACTTGTTCATGTTTCTTCC

Fln Alignment:

CL416Contig1___AKPPNASEGRRRHQRLILQEDSDNEDDFPVSVEIR--ELPKRKPQVNMWASIAKMDIHPAREDQKGDLVDEVTPGKQVKLTNNVAMNQPVRKSSRIPKKRVLYGAYDMDDDAERALQNKSSRTTKKCVRNGEYDEDEECETLQL*SSRIPKKRMLDVEYEEDVQVQQHXXXXXRSKYHTDFEHLYYEDAEEAAA-WRDKDMGKTDVDHEGMKNRSEKKQEVGNSIVEDDKEVPLTARQRTMQSCKDAGSEVGANLIEFPGGLPQTTRRKRKEILSEVEQQLKKTEAAQKRXXXXXXXXXXXXXXXXXXXXXXXXXXXKRADKLQKQRDAMAQRKVASDMSLASNGVRWVMGPSGTVVTFSENTGLPSIFNN-PCRYPPPREKCAGPFCNNTYKYRDSRTNLPLCSLQCYRAMHTV*LTVSSH
C0PS52_______________AKPPRTSEGVQRRQRLILQENSDDEDDFSPNTEQRFQESPKHSLTIKIRAAVRHSD-STVKEDIRSKSLDGGI-FRRIDTTNGSPPLQPVRK-----------------------------------------------------SSRIPKKYVPEDEYVEDEEDYEAPQSKRKLKSERGLEELYQDDDDDKGPPSSNEDSESSDSEIDDVKRR---KVDSPSSIVDSKKEVPLTARQRAVQFSRTV-PEARESLIEFPDGLPHFSQRKRQEKIPEFEQQLKKADAAQRRRMQAEKAAQKIQDDAIKKILGQDTLKQKREEKLRRQRDEMAQEKRDAAKTIAPNTIRWVIGPSGTVVSFSEDAEFLGIFNSVPCRYPPAREKCAGPSCNNTYKYRDSKSNLPLCSLLCYRAIHDMAQPLSTH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain