SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47506

Length: 311 nt

UniGene Fasta

>sp_v3.0_unigene47506
GATGCTTGAGAAAGCATGGGCATGGTTTGAAAGGTTCCATCTTGCTGGAGGAATGAGCTGTGAATGCTATGCTGCCAATATTGATGCATATGGGGAACAGGGTTATTGGTTAGAAGCTGAAAAGGTGTTTAAGTGCAGTCAAGAAAGAGGCGAGGGTCAAACTGTATTAGAATTTAATGTCATGATCAAGGCCTATGGGATTGCAAAAGTCCATGACAAGGTTCTGAAGTTGTTTGAAAGAATGGAAGTTCAAGGGGTTTTGCCTGACAGATGTACATATGCTTCTGTCATTCAGACATTTGCAAGTTCAG

Ace file of the UniGene sp_v3.0_unigene47506

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RTG3_RICCO	-	-	2.0e-29	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%

Source	Gene names
Sma3	At1g73710; At3g23020; F25P22.13; GSVIVT00020111001; MXC7.5; MtrDRAFT_AC161864g19v2; RCOM_0909460;

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G23020.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:8177215-8179743 REVERSE LENGTH=842	1.0e-35	60%
RefSeq	Arabidopsis thaliana	NP_188942.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-35	60%
RefSeq	Populus trichocarpa	XP_002319373.1	predicted protein [Populus trichocarpa]	4.0e-18	50%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXP3

Fln msg: Distance to subject end: 185 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 103 - 278

Fln protein: MLEKAWAWFERFHLAGGMSCECYAANIDAYGEQGYWLEAEKVFKCSQERGEGQTVLEFNVMIKAYGIAKVHDKVLKLFERMEVQGVLPDRCTYASVIQTFASS

Protein Length: 104

Fln nts: G_-_ATGCTTGAGAAAGCATGGGCATGGTTTGAAAGGTTCCATCTTGCTGGAGGAATGAGCTGTGAATGCTATGCTGCCAATATTGATGCATATGGGGAACAGGGTTATTGGTTAGAAGCTGAAAAGGTGTTTAAGTGCAGTCAAGAAAGAGGCGAGGGTCAAACTGTATTAGAATTTAATGTCATGATCAAGGCCTATGGGATTGCAAAAGTCCATGACAAGGTTCTGAAGTTGTTTGAAAGAATGGAAGTTCAAGGGGTTTTGCCTGACAGATGTACATATGCTTCTGTCATTCAGACATTTGCAAGTTCAG

Fln Alignment:

CL20654Contig1___SCECYAANIDAYGEQGYWLEAEKVFKCSQERGEGQTVLEFNVMIKAYGIAKVHDKVLKLFERMEVQGVLPDRCTYASVIQTFASS
A9NXP3_______________SLQTYNTMISVYGKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGFFQDAAKLFSRMQQEGIKPGKVTYNTMLDAYARS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain