SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47457

Length: 127 nt

UniGene Fasta

>sp_v3.0_unigene47457
TCTCTTGCGGCCTCAACATTTGATAGCAGCCAGCTTGTTTTAACTGCTTGCACAGGGTACCAAACACTAGATGAGACCAAGCTGCAAACTCTACAGGAAAAACATCGCCCCAAGATCTTAGCTGTTA

Ace file of the UniGene sp_v3.0_unigene47457

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RabGAP/TBC domain-containing protein-like n=2 Tax=Oryza sativa RepID=Q5QMF8_ORYSJ	-	-	1.0e-08	68%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	70%

Source	Gene names
Sma3	OSJNBa0009E21.5; Os01g0835000; Os05g0465100; OsI_04332; OsI_20262; OsJ_03987; OsJ_18844; P0506B12.13; POPTRDRAFT_916074;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	Rab GTPase activator activity	GO:0005097	Molecular Function	-
Sma3	regulation of Rab GTPase activity	GO:0032313	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Rab-GTPase-TBC domain	IPR000195	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G55020.1	Ypt/Rab-GAP domain of gyp1p superfamily protein chr3:20389278-20394713 REVERSE LENGTH=777	9.0e-12	65%
RefSeq	Arabidopsis thaliana	NP_567014.2	RabGAP/TBC domain-containing protein [Arabidopsis thaliana]	1.0e-11	65%
RefSeq	Populus trichocarpa	XP_002312052.1	predicted protein [Populus trichocarpa]	8.0e-12	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1LFH6

Fln msg: Distance to subject end: 211 aas, your sequence is shorter than subject: 42 - 753

Fln protein: SLAASTFDSSQLVLTACTGYQTLDETKLQTLQEKHRPKILAV

Protein Length: 43

Fln nts: TCTCTTGCGGCCTCAACATTTGATAGCAGCCAGCTTGTTTTAACTGCTTGCACAGGGTACCAAACACTAGATGAGACCAAGCTGCAAACTCTACAGGAAAAACATCGCCCCAAGATCTTAGCTGTTA

Fln Alignment:

CL20118Contig1___SLAASTFDSSQLVLTACTGYQTLDETKLQTLQEKHRPKILA
I1LFH6_______________SLAGSTFDSSQLVLTACMGYQNINETRLQQLRNKHRPAVIA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain