SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47403

Length: 1261 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene47403

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAC domain containing protein 36 [Arabidopsis thaliana] gb\|AEC06578.1\| NAC domain containing protein 36 [Arabidopsis thaliana]	-	-	1.00053e-42	54%
FL-Next	sp=NAC domain-containing protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Sma3	NAC domain protein, IPR003441	-	-	1.893e-40	-

Source	Gene names
Sma3	ANAC094; AT4g17980; ATAF1; At1g01720; At1g26870; At1g34180; At1g34190; At1g52880; At1g61110; At1g61110/F11P17_16; At1g77450; At1g77450/T5M16_4; At2g02450; At2g17040; At3g15500; At3g15510; At4g17980; At4g27410; At5g08790; At5g08980; At5g22380; At5g39820; A

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of cell size	GO:0008361	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-
Sma3	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	positive regulation of asymmetric cell division	GO:0045770	Biological Process	-
Sma3	somatic stem cell division	GO:0048103	Biological Process	-
Sma3	root cap development	GO:0048829	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G17040.1	anac036, NAC036 NAC domain containing protein 36 chr2:7407123-7408120 FORWARD LENGTH=276	54%
RefSeq	Arabidopsis thaliana	NP_565404.2	NAC domain containing protein 36 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002305547.1	NAC domain protein, IPR003441 [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q39013

Fln msg:

Fln protein: MQQETYNDVKMQGELMNLPGFRFHPTEEELLRFYLKKKVQGCHQVNLDIIIPTLDVYQYDPSELPGLAHDAWERQWFFFVPRDHKNSCRRPNRLTVSGYWKATGSDRPVRNDLLQCIGLKKILVFYRGKAPCGQKTDWIMNEYRMPDFRSSPGQKKKTDIVLCRIYRKAASKKSMEQRANLDYFRKEESAVSGDEYKEGSHSVTLNDSCQLSNSVTRDQISSIHYNENQEGLCFSDPGKTNKDARLFECLEPIIFSEETMVLKTPKTYKPAQLELPILSMDSFYSRSISTPYSLLPTPSPFHIPLL*

Protein Length: 308

Fln nts: C_-_ATGCAGCAAGAAACATACAACGATGTGAAGATGCAGGGAGAGTTAATGAATCTTCCAGGCTTCAGATTCCATCCCACAGAAGAGGAGCTATTGCGCTTCTATTTGAAAAAAAAGGTTCAAGGGTGCCACCAAGTGAACCTCGATATAATCATACCAACCTTGGACGTGTATCAATATGACCCCTCGGAGTTACCAGGTTTGGCTCACGATGCTTGGGAGAGACAATGGTTCTTTTTCGTTCCAAGAGATCACAAGAATTCATGCCGTCGGCCTAACAGATTGACAGTTTCGGGTTACTGGAAGGCTACAGGTTCAGACAGACCAGTTCGCAACGATCTGCTTCAGTGCATCGGTCTGAAGAAAATTCTCGTGTTTTATAGAGGAAAAGCCCCCTGCGGTCAGAAGACAGACTGGATCATGAACGAGTACAGGATGCCAGATTTCAGATCCTCCCCGGGCCAGAAGAAGAAGACAGATATTGTTTTATGCCGCATATACCGAAAGGCTGCCTCTAAGAAGTCGATGGAACAACGGGCGAACCTGGATTACTTTCGGAAGGAAGAATCGGCTGTTTCTGGGGATGAATACAAAGAGGGTTCTCATTCAGTCACCCTTAATGACAGCTGCCAGTTATCAAATTCCGTCACAAGGGATCAAATTTCTTCGATACATTATAATGAAAATCAGGAAGGGTTGTGTTTTTCTGATCCAGGCAAAACAAACAAAGATGCTCGTCTGTTTGAGTGTCTGGAACCGATAATATTTTCTGAAGAAACAATGGTATTAAAGACCCCTAAAACCTACAAGCCAGCGCAATTAGAGTTGCCCATCTTGTCGATGGACTCCTTTTATAGCCGTTCAATATCGACTCCTTATTCCCTTCTGCCTACCCCATCGCCGTTCCATATTCCATTACTTTAG___ATAACATTACGCCTCCATGCTTAAATATGTTGTTCAGTGCTGTTGCTCATGTAATTCAAGCCTGCATTGTTTATGAAAATACACCGATAATTATTATTTATGCCGGAGCCATGTGAGTTGAATTTTGGACAGGAATAAGGGAGGGGTTTAGAGTTCCTCCGTACAGATTGGATTGAATCGATTTATGTGGATGTAAACGTAATTTTACCATATTAACATATAGACCAGCTTGAATATCGCTTATTTTAAGCGTTAATGTATTTTAGGTAATAACGTTTTTGGCGCTAGTAAAGATATAGCAGTTGTGCACAAATACGATATAATGATCGAATTGAATGT

Fln Alignment:

CL19546Contig1___ELMNLP-GFRFHPTEEELLRFYLKKKVQGCHQVNLDI-IIPTLDVYQYDPSELPGLAHDAWERQWFFFVPRDHKN-SCRRPNRLTVSGYWKATGSDRPVRNDLLQCIGLKKILVFYRGKAPCGQKTDWIMNEYRMPDFRSSPGQKKKT----DIVLCRIYRKAASKKSMEQRANLDYFRKEESAVSGDEYKEGSHSVT
Q39013_______________ELLQLPPGFRFHPTDEELVMHYLCRK---CASQSIAVPIIAEIDLYKYDPWELPGLALYG-EKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPI--GLPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIYNK---KGATERRG------PPPPVVYGDEIMEEKPKVT

SSRs (tot: 1)

Start position	End position	Sequence	Length
462	473	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain