SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47363

Length: 147 nt

UniGene Fasta

>sp_v3.0_unigene47363
GCACTTACAAGCTTGACATCTTTGAATGTTGCCTTCAATAATTTCTCTGGCCCTCTTCCTGCAACACCCTTTTTTAGAACCTTGACAACAAATTCTTTTGTGGGCAATGCTGGGCTCTGTGTTTCCCTTGACGGCCAAACTTGTTCT

Ace file of the UniGene sp_v3.0_unigene47363

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat transmembrane protein kinase n=1 Tax=Glycine max RepID=C6ZRZ9_SOYBN	-	-	5.0e-13	67%
FL-Next	sp=Probable LRR receptor-like serine/threonine-protein kinase At1g34110; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%

Source	Gene names
Sma3	AT1G34110; F12G12.7; GSVIVT00005395001; LRR-RLK; POPTRDRAFT_551280; RCOM_0296440;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G34110.1	Leucine-rich receptor-like protein kinase family protein chr1:12417331-12421246 REVERSE LENGTH=1072	4.0e-16	63%
RefSeq	Arabidopsis thaliana	NP_174673.3	leucine-rich receptor-like protein kinase [Arabidopsis thaliana]	5.0e-16	63%
RefSeq	Populus trichocarpa	XP_002302156.1	predicted protein [Populus trichocarpa]	2.0e-16	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: C0LGF5

Fln msg: Distance to subject end: 382 aas, your sequence is shorter than subject: 49 - 1072

Fln protein: ALTSLTSLNVAFNNFSGPLPATPFFRTLTTNSFVGNAGLCVSLDGQTCS

Protein Length: 50

Fln nts: GCACTTACAAGCTTGACATCTTTGAATGTTGCCTTCAATAATTTCTCTGGCCCTCTTCCTGCAACACCCTTTTTTAGAACCTTGACAACAAATTCTTTTGTGGGCAATGCTGGGCTCTGTGTTTCCCTTGACGGCCAAACTTGTTCT

Fln Alignment:

CL19022Contig1___ALTSLTSLNVAFNNFSGPLPATPFFRTLTTNSFVGNAGLCVSLDGQTCS
C0LGF5_______________SLTSLASLNISCNNFSGPIPSTPFFKTISTTSYLQNTNLCHSLDGITCS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain