SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47335

Length: 284 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene47335
ATCTGTATCACATGATAAGTTACTATTAGGGGCATCAAGAGTGGCTGTGAAATCTCTTTGTGAGATCTTAATATTGGGAAAAATGAACTCTGCAAATTATGAATGGCAGGGATTTTGTGGACAAGATGGCTTATTGACAAAGGCTGTCAAGACACGTGTTGAGATGGAGCGTGATAGAAGAGGCTATCTCTCAAATCCTTCAAGGGAAAGGAAAATGGACCGTAACTTTGATGCAACAAATGAAAGAGAATGCTTTTCATGTTACTATGATCTGCATCTTTCTG

Ace file of the UniGene sp_v3.0_unigene47335 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Jumonji domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I0V1_POPTR	-	-	5.0e-24	56%
FL-Next	Isoform 2 of Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14	-	-	0.0	50%
Sma3	Jumonji domain protein	-	-	1.889e-14	-

Source	Gene names
Sma3	AT4g20400; At1g08620; At1g30810/T17H7.10; At4g20400; F9F13.50; GSVIVT00002226001; GSVIVT00028571001; GSVIVT00035196001; JMJ905; JMJ907; JMJ908; JMJ910; Os05g0302300; OsI_19371; OsJ_17964; POPTRDRAFT_233020; POPTRDRAFT_241426; POPTRDRAFT_248138; POPTRDRAFT

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L32p	IPR002677	-	-
Sma3	JmjC domain	IPR003347	-	-
Sma3	Transcription factor jumonji, JmjN	IPR003349	-	-
Sma3	FY-rich, N-terminal	IPR003888	-	-
Sma3	FY-rich, C-terminal	IPR003889	-	-
Sma3	Zinc finger, C5HC2-type	IPR004198	-	-
Sma3		IPR013129	-	-
Sma3	FY-rich, C-terminal subgroup	IPR018516	-	-
Sma3	FY-rich, N-terminal subgroup	IPR018518	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G08620.1	PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein chr1:2737554-2743370 FORWARD LENGTH=1209	4.0e-27	54%
RefSeq	Arabidopsis thaliana	NP_172338.4	transcription factor jumonji and C5HC2 type zinc finger domain-containing protein [Arabidopsis thaliana]	5.0e-27	54%
RefSeq	Populus trichocarpa	XP_002317068.1	jumonji domain protein, partial [Populus trichocarpa]	5.0e-30	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GUI6-2

Fln msg: Distance to subject end: 425 aas, your sequence is shorter than subject: 94 - 897

Fln protein: SVSHDKLLLGASRVAVKSLCEILILGKMNSANYEWQGFCGQDGLLTKAVKTRVEMERDRRGYLSNPSRERKMDRNFDATNERECFSCYYDLHLS

Protein Length: 95

Fln nts: ATCTGTATCACATGATAAGTTACTATTAGGGGCATCAAGAGTGGCTGTGAAATCTCTTTGTGAGATCTTAATATTGGGAAAAATGAACTCTGCAAATTATGAATGGCAGGGATTTTGTGGACAAGATGGCTTATTGACAAAGGCTGTCAAGACACGTGTTGAGATGGAGCGTGATAGAAGAGGCTATCTCTCAAATCCTTCAAGGGAAAGGAAAATGGACCGTAACTTTGATGCAACAAATGAAAGAGAATGCTTTTCATGTTACTATGATCTGCATCTTTCTG

Fln Alignment:

CL18674Contig1___SVSHDKLLLGASRVAVKSLCEILILGKMNSANYEWQGFCGQDGLLTKAVKTRVEMERDRRGYLSNPSRERKMDRNFDATNERECFSCYYDLHLS
Q8GUI6-2_____________SLSHDKLLLGAAMEATYCLWELSLSKKKTPVIARWKRVCSEDGLLTKAVKKRVQMEEERLNHLQDGFSLRKMEGDFDNKRERECFLCFYDLHMS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain