SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47052

Length: 1148 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene47052 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	54%
Sma3	Nucleoside-triphosphatase, putative	-	-	3.681e-09	-

Source	Gene names
Sma3	6J23.20; AT4g23440; At4g23440; At5g56220; At5g56220/K24C1_3; F16G20.140; GSVIVT00003329001; GSVIVT00012890001; Os01g0760400; Os08g0499100; Os09g0481600; OsI_03819; OsI_29754; OsI_31792; OsJ_03529; OsJ_27818; OsJ_29780; P0460E08.19; P0463D04.26; P0512C01.8

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G56220.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr5:22754871-22757792 FORWARD LENGTH=973	48%
RefSeq	Arabidopsis thaliana	NP_200433.1	nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002303599.1	tir-nbs resistance protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BA93

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 382 - 1011

Fln protein: RELLRDVPYLLIIDNLESEMDWWDGRDILELLPRINAATHVIITTRLPHVMNFKPLELSSLSGVQAMLLMKGKKDFPSQELDALRTIEEKLGRLTFGLGVVGTLISELSITPCALLEAINKVPLRELTWTVRDDPTLKNNPFLVQLLGVIFSILNHANRPRSLASRMVWVGGWFAPAPIPVSLLASAAHKVSANGSGMYLPKKCLKLLCCCLLASQTKRWEADAVALLLRFGIAKKTSRQGWIHFHEIIQLYARKKGGVPAAKAMVQGIRKKAIVSVHPEHFWAACFLLFSFGNDPVIVEFKVMDLILFIKRGVLPLAVRAFTVFSRCHASMELLKLCTSALEEVEKTFVSQIEGWCDRSLCCKKGANSSYHVDEYVWQDVT

Protein Length: 383

Fln nts: GAGGGAATTGTTAAGAGATGTACCTTATTTGCTTATTATTGACAATTTGGAAAGTGAGATGGATTGGTGGGATGGCAGAGACATTTTGGAGTTGCTTCCTCGTATTAATGCAGCTACCCATGTGATAATCACTACTCGGCTTCCACATGTAATGAATTTTAAGCCTCTAGAGTTATCGTCTCTCTCTGGAGTTCAGGCAATGCTTCTGATGAAGGGGAAAAAGGACTTTCCTTCTCAGGAGTTGGATGCATTGAGAACCATAGAGGAGAAGTTGGGTCGGTTGACTTTTGGTTTGGGGGTTGTTGGAACACTCATTTCAGAGCTTTCAATTACTCCCTGTGCACTGTTGGAGGCTATCAACAAGGTACCCTTAAGAGAACTAACATGGACCGTGAGGGATGATCCAACATTGAAGAATAATCCATTCCTTGTGCAACTTTTAGGGGTGATTTTCTCTATTCTTAACCATGCAAATAGACCACGGAGTCTGGCTTCTAGAATGGTTTGGGTTGGTGGGTGGTTTGCACCTGCTCCAATTCCAGTCTCCCTACTAGCCTCTGCAGCCCACAAGGTTTCTGCCAACGGAAGTGGGATGTATTTGCCAAAGAAATGCCTCAAACTCTTGTGTTGCTGCCTTTTAGCTTCTCAAACTAAGAGATGGGAGGCAGATGCTGTTGCTTTGTTACTTCGATTTGGCATTGCAAAGAAAACAAGCAGGCAGGGATGGATTCATTTTCATGAAATAATTCAGCTATATGCTCGGAAGAAAGGAGGTGTTCCAGCTGCCAAAGCTATGGTCCAAGGAATCAGGAAGAAGGCAATTGTTTCTGTTCACCCCGAACATTTTTGGGCAGCCTGCTTCCTTTTATTTTCTTTTGGGAATGATCCAGTGATTGTAGAATTCAAAGTGATGGACTTGATTTTGTTCATAAAGAGAGGAGTTCTTCCACTTGCAGTTCGCGCCTTTACAGTATTTTCTCGATGCCATGCTTCCATGGAACTCCTAAAGCTGTGCACCAGTGCACTGGAGGAAGTGGAGAAAACCTTTGTGTCACAGATTGAGGGTTGGTGTGACAGATCTTTGTGTTGTAAAAAAGGGGCTAATTCTAGTTATCATGTGGATGAGTATGTCTGGCAGGATGTCACGT

Fln Alignment:

CL15570Contig1___RELLRDVPYLLIIDNLESEMDWWDGRDILELLPRINAATHVIITTRLPHVMNFKPLELSSLSGVQAMLLMKGK-KDFPSQELDALRTIEEKLGRLTFGLGVVGTLISELSITPCALLEAINKVPLRELTWTVRDDPTLKNNPFLVQLLGVIFSILNHANRPRSLASRMVWVGGWFAPAPIPVSLLASAAHKVSANGSGMYLPXXXXXXXXXXXLASQTKRWEADAVALLLRFGIAKKTSRQGWIHFHEIIQLYARKKGGVPAAKAMVQGIRKKAIVSVHPEHFWAACFLLFSFGNDPVIVEFKVMDLILFIKRGVLPLAVRAFTVFSRCHASMELLKLCTSALEEVEKTFVSQIEGWCDRSLCCKKGANSSYHVDEYVWQDV
A5BA93_______________KELMRNIPFLVVLDNLESEKDWWDQKLIMDLLPRFGGDTHFIISTRLPRIMNLEPLKLSYLSGVEAMSLMQGSVKDYPIVEIDALRVIEEKLGRLTLGLAIVGAILSELPINPSRLLDTINRMPLRDLTWSGREGHLLRRNTFLFQLFEVCFSIFDHADGPRSLATRMVQVSGWFAPSAIPIFLLALAANKVPEKHQGTRLWKKFLHSLTCGLTSSYTKRSEAEASSMLLRFNIARSSTKQGYLHFNELIKLYALKKGVTGVAQAMVQAVIGRGSISQHSEHLWAACFLLFGFGNDPIVVELKVSELLFLVKEVVLPLAIRTFITFSRCSAALELLRLCTNALEAADQAFVTPVEKWLDSSLCWKP-IQTNAQLNPCLWQEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain