SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46974

Length: 395 nt

UniGene Fasta

>sp_v3.0_unigene46974
TCCTTGCAGTCAGCAGAATGATTCTGATCGAGAAGAAAATTGTTTGGCAAGGAGATTAGAGTTCCTTTGTCAAAGTAAAACCTGCAGGCATTTTACATATCAGGAGTTGCAATCTGCTACTTCTGGTTTTTCAACAGGGAATTTTATAGGAAGAGGAGGCTGCAGTAAGGTGTACAGAGGATTTCTCCCTGATGGACAATCAGTGGCAGTGAAAATCTTGAATTCATCATCCAAAACAGAGCAAGAGCTTCTTTCTGAAGTTGAGATTCTTACTCTATTGAAACACAACCATGTCATTACACTTATCGGTTACTGCGCAGAAGGCCTTAACCGCCTTCTGGTGTATAATTTTGTATCCAGAGGAAACCTTGAAGAGAATCTCCATGGAGGAGAAG

Ace file of the UniGene sp_v3.0_unigene46974

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	adenine nucleotide alpha hydrolases-domain containing protein kinase [Arabidopsis thaliana] gb\|AAL57632.1\| At1g21590/F24J8_9 [Arabidopsis thaliana] gb\|AAM98263.1\| At1g21590/F24J8_9 [Arabidopsis thaliana] gb\|AEE30121.1\| adenine nucleotide alpha hydrolases-	-	-	3.0e-28	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Somatic embryogenesis receptor kinase, putative	-	-	2.646e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphorylase kinase.	EC:2.7.11.19	-	8.823e-08	-

Source	Gene names
Sma3	AT3G24550; At1g21590; At2g16750; At3g13690; At5g63940; F14J9.10; F28P22.27; GSVIVT00006021001; GSVIVT00014382001; GSVIVT00015455001; GSVIVT00016587001; GSVIVT00016739001; GSVIVT00022528001; GSVIVT00034194001; GSVIVT00036119001; GSVIVT00036391001; GmPERK1;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G21590.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain chr1:7566613-7569694 REVERSE LENGTH=756	3.0e-34	54%
RefSeq	Arabidopsis thaliana	NP_173578.2	adenine nucleotide alpha hydrolases-domain containing protein kinase [Arabidopsis thaliana]	4.0e-34	54%
RefSeq	Populus trichocarpa	XP_002306655.1	predicted protein, partial [Populus trichocarpa]	6.0e-35	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 306 aas, your sequence is shorter than subject: 131 - 656

Fln protein: PCSQQNDSDREENCLARRLEFLCQSKTCRHFTYQELQSATSGFSTGNFIGRGGCSKVYRGFLPDGQSVAVKILNSSSKTEQELLSEVEILTLLKHNHVITLIGYCAEGLNRLLVYNFVSRGNLEENLHGGE

Protein Length: 132

Fln nts: TCCTTGCAGTCAGCAGAATGATTCTGATCGAGAAGAAAATTGTTTGGCAAGGAGATTAGAGTTCCTTTGTCAAAGTAAAACCTGCAGGCATTTTACATATCAGGAGTTGCAATCTGCTACTTCTGGTTTTTCAACAGGGAATTTTATAGGAAGAGGAGGCTGCAGTAAGGTGTACAGAGGATTTCTCCCTGATGGACAATCAGTGGCAGTGAAAATCTTGAATTCATCATCCAAAACAGAGCAAGAGCTTCTTTCTGAAGTTGAGATTCTTACTCTATTGAAACACAACCATGTCATTACACTTATCGGTTACTGCGCAGAAGGCCTTAACCGCCTTCTGGTGTATAATTTTGTATCCAGAGGAAACCTTGAAGAGAATCTCCATGGAGGAGAAG

Fln Alignment:

CL14835Contig1___RHFTYQELQSATSGFSTGNFIGRGGCSKVYRGFLPDGQSVAVKILN-SSSKTEQELLSEVEILTLLKHNHVITLIGYCAEGLNRLLVYNFVSRGNLEENLHG
C0PRI9_______________RTFTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain