SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46906

Length: 275 nt

UniGene Fasta

>sp_v3.0_unigene46906
AAAAACACATACAATGCTTGGTGACATTGATGAATTGGACAGGCGACCTAGTGCAAACCGTGGAATGACTCCTCGTATTTTTGAATATTTATTTGCAAGAATCAAAGCGGAAGAGGAAAGCCATAGACATGAGCAACTGACATATATCTGCAAATGCTCCTTCCTTGAGATTTATAATGAGCAGATTACAGATCTGTTGGAGCCATCTTCTACTAATTTACAATTGAGAGAAGATGTTGGGAAGGGTGTATATGTTGAAAACCTTACAGAGATTG

Ace file of the UniGene sp_v3.0_unigene46906

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinesin-like polypeptides 8 (Fragment) n=3 Tax=core eudicotyledons RepID=Q9AVD3_TOBAC	-	-	4.0e-35	81%
FL-Next	sp=Kinesin-like protein FLA10; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	0.0	36%
Sma3	Kinesin-like protein	-	-	1.43e-07	-

Source	Gene names
Sma3	At3g23670; At3g44050; At4g14150; GSVIVT00017472001; GSVIVT00019702001; GSVIVT00031645001; GSVIVT00036525001; LOC_Os03g39020; LOC_Os03g53920; LOC_Os12g39980; MtrDRAFT_AC150799g23v2; OSJNBa0047E24.25; OSJNBb0085A04.1; Os03g0587200; Os03g0750200; Os12g059050

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	plus-end-directed microtubule motor activity	GO:0008574	Molecular Function	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	phragmoplast assembly	GO:0000914	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	microgametogenesis	GO:0055046	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Aspartate/ornithine carbamoyltransferase	IPR006130	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19050.1	POK2 phragmoplast orienting kinesin 2 chr3:6578047-6590106 FORWARD LENGTH=2771	5.99994e-41	77%
RefSeq	Arabidopsis thaliana	NP_188535.4	phragmoplast orienting kinesin 2 [Arabidopsis thaliana]	7.00005e-41	77%
RefSeq	Populus trichocarpa	XP_002314990.1	predicted protein [Populus trichocarpa]	1.0e-37	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P46869

Fln msg: Distance to subject end: 602 aas, your sequence is shorter than subject: 91 - 786

Fln protein: KTHTMLGDIDELDRRPSANRGMTPRIFEYLFARIKAEEESHRHEQLTYICKCSFLEIYNEQITDLLEPSSTNLQLREDVGKGVYVENLTEI

Protein Length: 92

Fln nts: AAAAACACATACAATGCTTGGTGACATTGATGAATTGGACAGGCGACCTAGTGCAAACCGTGGAATGACTCCTCGTATTTTTGAATATTTATTTGCAAGAATCAAAGCGGAAGAGGAAAGCCATAGACATGAGCAACTGACATATATCTGCAAATGCTCCTTCCTTGAGATTTATAATGAGCAGATTACAGATCTGTTGGAGCCATCTTCTACTAATTTACAATTGAGAGAAGATGTTGGGAAGGGTGTATATGTTGAAAACCTTACAGAGATTG

Fln Alignment:

CL14045Contig1___KTHTMLGDIDELDRRPSANRGMTPRIFEYLFARIKAEEESHRHEQLTYICKCSFLEIYNEQITDLL-EPSSTNLQLREDVGKGVYVENLTE
P46869_______________KSHTMEGK-DE----PPELRGLIPNTFRYVFEIIARDSGTKE-----FLVRSSYLEIYNEEVRDLLGKDHSKKMELKESPDRGVYVKDLSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain