SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46897

Length: 163 nt

UniGene Fasta

>sp_v3.0_unigene46897
TCAGTCATGTCATTGATTCTACTTGGACGAGCTGCTTTTGTGTTCCCTCTTTCTGCTTTATCAAATTATATGCGAAGGGATTCTGAGATCAGACGGATTTCATTCAGGAATCAGGTGGTTATCTGGTGGGCTGGTTTGATGCGAGGAGCTGTTTCAATTGCCT

Ace file of the UniGene sp_v3.0_unigene46897

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sodium/hydrogen exchanger n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TD24_PHYPA	-	-	2.0e-14	70%
FL-Next	sp=Sodium/hydrogen exchanger; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Sodium/hydrogen exchanger	-	-	0.0	-

Source	Gene names
Sma3	At3g05030; At3g06370; At5g55470; F24P17.16; GSVIVT00008893001; GSVIVT00023595001; GSVIVT00027228001; HvNHX1; InNHX2; InNhx1; ItNHX1; MTE17.18; NHEXL1a; NHEXL1b; NHEXL1c; NHX; NHX1; NHX2; NHX3; NHX4; NHXI; NhPurple; OSJNBa0077J22.22; Os05g0148600; Os07g066

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sodium:hydrogen antiporter activity	GO:0015385	Molecular Function	-
Sma3	sodium ion binding	GO:0031402	Molecular Function	-
Sma3	sodium ion transport	GO:0006814	Biological Process	-
Sma3	regulation of pH	GO:0006885	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Na+/H+ exchanger	IPR004709	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3		IPR018406	-	-
Sma3		IPR018407	-	-
Sma3	Cation/H+ exchanger, CPA1 family	IPR018422	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55470.1	ATNHX3, NHX3 Na+/H+ (sodium hydrogen) exchanger 3 chr5:22469553-22472585 REVERSE LENGTH=529	2.0e-17	66%
RefSeq	Arabidopsis thaliana	NP_200358.1	sodium/hydrogen exchanger 4 [Arabidopsis thaliana]	2.0e-17	66%
RefSeq	Populus trichocarpa	XP_002328385.1	sodium proton exchanger [Populus trichocarpa]	2.0e-14	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSW3

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 54 - 552

Fln protein: SVMSLILLGRAAFVFPLSALSNYMRRDSEIRRISFRNQVVIWWAGLMRGAVSIA

Protein Length: 55

Fln nts: TCAGTCATGTCATTGATTCTACTTGGACGAGCTGCTTTTGTGTTCCCTCTTTCTGCTTTATCAAATTATATGCGAAGGGATTCTGAGATCAGACGGATTTCATTCAGGAATCAGGTGGTTATCTGGTGGGCTGGTTTGATGCGAGGAGCTGTTTCAATTGCCT

Fln Alignment:

CL13959Contig1___VMSLILLGRAAFVFPLSALSNYMRRDSEIRRISFRNQVVIWWAGLMRGAVSIA
C0PSW3_______________LLGLILVGRAAFVFPLSFLSNCLKRTPN-SRIGFRQQFVIWWAGLMRGAVSMA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain