UniGene Name: sp_v3.0_unigene46755
Length: 209 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
UniGene Fasta (sense) |
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>sp_v3.0_unigene46755
G |
Ace file of the UniGene sp_v3.0_unigene46755 (antisense) |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | DUF659 domain containing protein | - | - | 1.0e-19 | 64% |
FL-Next | tr=Putative uncharacterized protein; Vitis vinifera (Grape). | - | - | 0.0 | 68% |
Sma3 | Chromosome chr9 scaffold_90, whole genome shotgun sequence | - | - | 6.637e-06 | - |
Source | Gene names |
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Sma3 | GSVIVT00000858001; GSVIVT00001531001; GSVIVT00014165001; GSVIVT00022661001; GSVIVT00024230001; GSVIVT00029236001; GSVIVT00031007001; GSVIVT00037518001; GSVIVT00037637001; GSVIVT00037638001; GSVIVT00038434001; Os05g0337100; OsJ_18110; VITISV_000096; VITISV |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | intracellular | GO:0005622 | Cellular Component | 0.0 | - |
Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
Sma3 | ubiquitin thiolesterase activity | GO:0004221 | Molecular Function | 0.0 | - |
Sma3 | hydrolase activity, hydrolyzing O-glycosyl compounds | GO:0004553 | Molecular Function | 0.0 | - |
Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
Sma3 | protein dimerization activity | GO:0046983 | Molecular Function | 0.0 | - |
Sma3 | carbohydrate metabolic process | GO:0005975 | Biological Process | 0.0 | - |
Sma3 | ubiquitin-dependent protein catabolic process | GO:0006511 | Biological Process | 0.0 | - |
Sma3 | DNA integration | GO:0015074 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Glycoside hydrolase, family 1 | IPR001360 | - | 0.0 | - |
Sma3 | Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 | IPR001578 | - | 0.0 | - |
Sma3 | Integrase, catalytic core | IPR001584 | - | 0.0 | - |
Sma3 | Polymorphic outer membrane protein repeat | IPR003368 | - | 0.0 | - |
Sma3 | Zinc finger, BED-type predicted | IPR003656 | - | 0.0 | - |
Sma3 | Sugar transporter, conserved site | IPR005829 | - | 0.0 | - |
Sma3 | Domain of unknown function DUF659 | IPR007021 | - | 0.0 | - |
Sma3 | Zinc finger, C2H2 | IPR007087 | - | 0.0 | - |
Sma3 | HAT dimerisation | IPR008906 | - | 0.0 | - |
Sma3 | IPR011523 | - | 0.0 | - | |
Sma3 | Reverse transcriptase, RNA-dependent DNA polymerase | IPR013103 | - | 0.0 | - |
Sma3 | Glycoside hydrolase, subgroup, catalytic domain | IPR013781 | - | 0.0 | - |
Sma3 | IPR015706 | - | 0.0 | - | |
Sma3 | Zinc finger, C2H2-like | IPR015880 | - | 0.0 | - |
Sma3 | ABC transporter, integral membrane type 1 | IPR017940 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT1G36095.1 | DNA binding chr1:13491370-13492725 REVERSE LENGTH=301 | 9.0e-14 | 54% |
RefSeq | Arabidopsis thaliana | NP_174842.1 | DNA binding protein [Arabidopsis thaliana] | 1.0e-13 | 54% |
RefSeq | Populus trichocarpa | XP_002329897.1 | predicted protein, partial [Populus trichocarpa] | 3.0e-15 | 56% |
Full-Lengther Next Prediction |
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Fln status: Putative C-terminus
Fln database: tr_plants
Fln subject: A5BLW8
Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 69 - 254
Fln protein:
N
Protein Length:
70
Fln nts:
G
Fln Alignment:
CL12386Contig1___EIAVQNVVQVITDNATNYVAANRMLMERHHTLFWTPCVAHCISLLLEDMG
A5BLW8_______________EIGEENVVQVITDNASNYVNAGMRLMERRRRLWWTPCAAHCIDLMLEDIG
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain