SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46697

Length: 2558 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene46697
AGGCGCCGGCTTGGATCATATTGGCCCTGCAGTTTTACATGAATTAGAAAGGTTCCCTGTGCATTCACTTGGGCTTCCATCACTTATGTCTGATCCAAGTGCCAAGACACCCGAAGAAGCATTAGTACATATTGTGGGAGAAGCAAGAAGGAATACACCTTCTATATTGTATTTGCCTCAACTTCAACTATGGTGGGAAACTGCACATCTTCAGCTAAGAGCTGTTTTATCAACTCTTTTGGAAGAGTTACCCTCAGATCTTCCTGTATTACTTCTTGCAACTTCATCAGTGCCGTTTGGTGAACTAGATGAAGAAATTGGTTCATTGTTTTCTCACCGCTATGTCTACCAAGTAGAAAAGCCAACTTCTGATGATAGGCTGAAGTTCATCTCAAAGATTGTCGATGCGTTTCTTACCATACCTGATCAAGAAGCTACCCAAAGGCCACAAAAAAATGTCCCTCTTCCTGCATTATTAAAGGTGCCGAAGTCAGAAAGGGGTCCCAGTGAGAGTGAGCTACGGTCTAAGGCAGAGGCAGAGGAACATGCCATTCGTCGACTTCGAATGTGTCTTCGAGATGTTTGTAACAGACTTCTGTATGAAAAACGGTTCAGTATATTCCACTATCCTGTTATGGATGAAGATGCTCCCGATTATCATTCCATAGTTCAAAATCCCATGGATGTGGCTACTTTACTGCAGCGTGTGGATAGTGGGCGTTACTTGACATGCTCCGCATTCCTGCAAGATGTGCAACTTATTCCTGCCAATGCAAAAGCATATAATGGAGATGATTACAATGGAGCTAGGATTGTCAGCAGAGCATATGCGCTAAGAGATGCAGTTCATGGCATGCTTTCTCAAATGGATCCAGCTTTGGTGGCCTTCTGTGATTCAATTGCTTCTCAGGGTGGGCCAACTCGCTTGCCAGAGGATTCAGCAACAACATTTCATTTAAATCCTGTTGTCCAACAAGTTCATGTTACAAGAGCAAGTGCTCGCTTACGCAATGTTCAGCCTGCAATGAATGTTTCACAAAGTTATGAAGTCTTGAAACGTTCAAAGCGGAACAATGATACTGATCAAGGTGAAGCTGTCGGAGGAGGCTCTGGTCACTTGGTTGAGGAAAAATCAGACCCTATGGAGACTGATACAATTGGGCAGAATGTTTCTTCAACAATAAAAAATTTTCAAAATGGTGTGGGAAATGAGACAGTTCAGGGAGTCCAACATCAAAATGCTGAGGCGCATAATGAAAATGACAAGGGGGATAAAGTTCCATTGGGCCCCACTGGTGTTGCAGAAAGTGTGGTGCCAGAAGTCGTCGAGGCTGGTGAAATCCGAGCCTCTGCAAAAGCAGCACCAATAAGCAAGCAGTTGGTAGGGCAGATTGAAGGGATAAAACAGAAATTTGTAAAATGCACTGATGATTATGGAATTCCAGAACTCGAAAGACTTTACTCTCGAGTTTGTCAAGGTGTGATTTCATTGAAAGATATGCCTGACAAACTGAGCATTGTTAGATTTTTGAAGGATTTTTTAGCAGATGAAAGTAATTTCTAAAGTTTATGGATCTGAACACATCCATTCAAGTGGTTGCAATGCGAGAGAAAAGTGTGAAAAGGTGTAGAACAGATCAATCAAATGTAGCCAGGGAAGCATATATTATATATGAACCATGCCCAGACTGAGAGATAAAATATTTTTAAAGTTCAATCACAATGCCACCTAGAGTAGGTCAGCAGCCTGCATGTTGTCCTGGAGTGGGGATTTTGGTGGCCAAATGGATGAGAGCGTTGTCTGATGTCATTAGAAATTTGGCAGCATTCTTTCATTATTTGTCTGTATTTCCTTGACAGAATTAATGGAACGTTCCTTTATATTCTCAATAACTGAGCTATATATTATAATCTGTCTCAAGCACCACCAGTTATGGGCAATTATGTTCTTGGTATTAAATTTAAAGTGCTTACTCATGGCTACAGATTTTAAGAATGACCAGTGTACAATGCAATTCAGAGTCACAACAGAAGTCTGATCTACTTCTCAAAGTTTGGTGTTCAGTGTTCAGTTGAGCTGCTTTTGATGCATGGAGAATCAAATCTGGATTCCCTTTATGCTGTGCAGGTTTCTAAACTGGTTTGTGAGGGTTTCGATTAAAAGATGAACGTTTCTGAGTCAAAATCGAAGACATAGTAAAATGGGACTTCCTTTAATGCATGGTGTTTCTTTGTGATTAAAATCATAATCACATGATGGCATGCAATTTGTCAAAAGCATAGGCTATCATCTTTTTTCTCACGGAGGAAATGACAAGTTATTCCAATATACATGCATTTACTGCTTCATTGTATGATGACAACATGATTATGAACAATAATTTGGTTGCCAATACTACATTTGAAATTTTAACAGTCCTTGAAATTTTTTGCTATGTTCATGGAAAATATATCATCCCTGGCCAGAAAATGGTCGTGTAATATCTTTATTATTTGATGCAGATACTTTGCATGCAATTTCAGCAGAGTTTTGCTACGGGTGAATAGCATATCTTCTG

Ace file of the UniGene sp_v3.0_unigene46697 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	bromodomain protein 103 [Zea mays] gb\|AAN41251.1\| bromodomain protein 103 [Zea mays]	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Sma3	Bromodomain protein	-	-	2.005e-10	-

Source	Gene names
Sma3	BRAT1501; BRAT903; BRAT904; BRAT905; BRD906; BRD911; GSVIVT00001933001; MICPUCDRAFT_56755; Os09g0515100; OsI_32034; OsJ_30004; P0450E05.23; PHYPADRAFT_185326; POPTRDRAFT_562244; POPTRDRAFT_594502; POPTRDRAFT_594503; POPTRDRAFT_594506; POPTRDRAFT_782220; R

Source	GOs	Term	Type	e value	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	0.0	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Bromodomain	IPR001487	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G05910.1	cell division cycle protein 48-related / CDC48-related chr1:1790796-1796503 FORWARD LENGTH=1210	51%
RefSeq	Arabidopsis thaliana	NP_563753.1	cell division cycle protein 48-like protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002327967.1	bromodomain protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPU6

Fln msg: your sequence is shorter than subject: 521 - 630

Fln protein: GAGLDHIGPAVLHELERFPVHSLGLPSLMSDPSAKTPEEALVHIVGEARRNTPSILYLPQLQLWWETAHLQLRAVLSTLLEELPSDLPVLLLATSSVPFGELDEEIGSLFSHRYVYQVEKPTSDDRLKFISKIVDAFLTIPDQEATQRPQKNVPLPALLKVPKSERGPSESELRSKAEAEEHAIRRLRMCLRDVCNRLLYEKRFSIFHYPVMDEDAPDYHSIVQNPMDVATLLQRVDSGRYLTCSAFLQDVQLIPANAKAYNGDDYNGARIVSRAYALRDAVHGMLSQMDPALVAFCDSIASQGGPTRLPEDSATTFHLNPVVQQVHVTRASARLRNVQPAMNVSQSYEVLKRSKRNNDTDQGEAVGGGSGHLVEEKSDPMETDTIGQNVSSTIKNFQNGVGNETVQGVQHQNAEAHNENDKGDKVPLGPTGVAESVVPEVVEAGEIRASAKAAPISKQLVGQIEGIKQKFVKCTDDYGIPELERLYSRVCQGVISLKDMPDKLSIVRFLKDFLADESNF*

Protein Length: 522

Fln nts: AGGCGCCGGCTTGGATCATATTGGCCCTGCAGTTTTACATGAATTAGAAAGGTTCCCTGTGCATTCACTTGGGCTTCCATCACTTATGTCTGATCCAAGTGCCAAGACACCCGAAGAAGCATTAGTACATATTGTGGGAGAAGCAAGAAGGAATACACCTTCTATATTGTATTTGCCTCAACTTCAACTATGGTGGGAAACTGCACATCTTCAGCTAAGAGCTGTTTTATCAACTCTTTTGGAAGAGTTACCCTCAGATCTTCCTGTATTACTTCTTGCAACTTCATCAGTGCCGTTTGGTGAACTAGATGAAGAAATTGGTTCATTGTTTTCTCACCGCTATGTCTACCAAGTAGAAAAGCCAACTTCTGATGATAGGCTGAAGTTCATCTCAAAGATTGTCGATGCGTTTCTTACCATACCTGATCAAGAAGCTACCCAAAGGCCACAAAAAAATGTCCCTCTTCCTGCATTATTAAAGGTGCCGAAGTCAGAAAGGGGTCCCAGTGAGAGTGAGCTACGGTCTAAGGCAGAGGCAGAGGAACATGCCATTCGTCGACTTCGAATGTGTCTTCGAGATGTTTGTAACAGACTTCTGTATGAAAAACGGTTCAGTATATTCCACTATCCTGTTATGGATGAAGATGCTCCCGATTATCATTCCATAGTTCAAAATCCCATGGATGTGGCTACTTTACTGCAGCGTGTGGATAGTGGGCGTTACTTGACATGCTCCGCATTCCTGCAAGATGTGCAACTTATTCCTGCCAATGCAAAAGCATATAATGGAGATGATTACAATGGAGCTAGGATTGTCAGCAGAGCATATGCGCTAAGAGATGCAGTTCATGGCATGCTTTCTCAAATGGATCCAGCTTTGGTGGCCTTCTGTGATTCAATTGCTTCTCAGGGTGGGCCAACTCGCTTGCCAGAGGATTCAGCAACAACATTTCATTTAAATCCTGTTGTCCAACAAGTTCATGTTACAAGAGCAAGTGCTCGCTTACGCAATGTTCAGCCTGCAATGAATGTTTCACAAAGTTATGAAGTCTTGAAACGTTCAAAGCGGAACAATGATACTGATCAAGGTGAAGCTGTCGGAGGAGGCTCTGGTCACTTGGTTGAGGAAAAATCAGACCCTATGGAGACTGATACAATTGGGCAGAATGTTTCTTCAACAATAAAAAATTTTCAAAATGGTGTGGGAAATGAGACAGTTCAGGGAGTCCAACATCAAAATGCTGAGGCGCATAATGAAAATGACAAGGGGGATAAAGTTCCATTGGGCCCCACTGGTGTTGCAGAAAGTGTGGTGCCAGAAGTCGTCGAGGCTGGTGAAATCCGAGCCTCTGCAAAAGCAGCACCAATAAGCAAGCAGTTGGTAGGGCAGATTGAAGGGATAAAACAGAAATTTGTAAAATGCACTGATGATTATGGAATTCCAGAACTCGAAAGACTTTACTCTCGAGTTTGTCAAGGTGTGATTTCATTGAAAGATATGCCTGACAAACTGAGCATTGTTAGATTTTTGAAGGATTTTTTAGCAGATGAAAGTAATTTCTAA___AGTTTATGGATCTGAACACATCCATTCAAGTGGTTGCAATGCGAGAGAAAAGTGTGAAAAGGTGTAGAACAGATCAATCAAATGTAGCCAGGGAAGCATATATTATATATGAACCATGCCCAGACTGAGAGATAAAATATTTTTAAAGTTCAATCACAATGCCACCTAGAGTAGGTCAGCAGCCTGCATGTTGTCCTGGAGTGGGGATTTTGGTGGCCAAATGGATGAGAGCGTTGTCTGATGTCATTAGAAATTTGGCAGCATTCTTTCATTATTTGTCTGTATTTCCTTGACAGAATTAATGGAACGTTCCTTTATATTCTCAATAACTGAGCTATATATTATAATCTGTCTCAAGCACCACCAGTTATGGGCAATTATGTTCTTGGTATTAAATTTAAAGTGCTTACTCATGGCTACAGATTTTAAGAATGACCAGTGTACAATGCAATTCAGAGTCACAACAGAAGTCTGATCTACTTCTCAAAGTTTGGTGTTCAGTGTTCAGTTGAGCTGCTTTTGATGCATGGAGAATCAAATCTGGATTCCCTTTATGCTGTGCAGGTTTCTAAACTGGTTTGTGAGGGTTTCGATTAAAAGATGAACGTTTCTGAGTCAAAATCGAAGACATAGTAAAATGGGACTTCCTTTAATGCATGGTGTTTCTTTGTGATTAAAATCATAATCACATGATGGCATGCAATTTGTCAAAAGCATAGGCTATCATCTTTTTTCTCACGGAGGAAATGACAAGTTATTCCAATATACATGCATTTACTGCTTCATTGTATGATGACAACATGATTATGAACAATAATTTGGTTGCCAATACTACATTTGAAATTTTAACAGTCCTTGAAATTTTTTGCTATGTTCATGGAAAATATATCATCCCTGGCCAGAAAATGGTCGTGTAATATCTTTATTATTTGATGCAGATACTTTGCATGCAATTTCAGCAGAGTTTTGCTACGGGTGAATAGCATATCTTCTG

Fln Alignment:

CL11533Contig1___EKPTSDDRLKFISK--IVDAFLTIPDQEA--TQRPQKNVPLPALLKVPKSERGPSESELRSKAEAEEHAIRR--LRMCLRDVCNRLLYEKRFSIFHYPVMDEDAPDYHSIVQNPMDVATLLQRVDSGR-YLTCSAFLQDVQLIPANAKAYN
B8LPU6_______________QRQTLDEKIRELSNCHIVYSGIDIQKKEAGIPRKPIKVEDIPGLKEAGWTPDQWGYSRIRLMNIPSEGLPNRQALHAFMRSLFKAMTEHADAWPFKDPVDPRDVPDYYDIIKDPMDLKTMSKRLDSEQYYVTLDMFVADVKRMFTNARTYN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain