SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46612

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene46612
TATTAACGAAGAGAAGCTGGCTTGAATTTGTTGAAGTGGAAAGAGAAGGTTTTTTCAATGAGGTGAAACAAGCTGTTTTAGGTGCTCATGCTCTTGCTGCCCAGAGCACAGCGATTACTTTTCTAGAGTCATTGGTTTCTGAATTTTCACCTTCAACTGCTAGTGCAATGGGGCTTCCTGCAGAGTTCCATGAAGACTGTCGGGCTTCCTTTGAATTGGGTTATTTGCAGCGAT

Ace file of the UniGene sp_v3.0_unigene46612

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	70%

Source	Gene names
Sma3	GSVIVT00002233001; PHYPADRAFT_148515; RCOM_0609300;

Source	GOs	Term	Type	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein import into nucleus, docking	GO:0000059	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Importin-beta, N-terminal	IPR001494	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04490.1	" unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38092.1); Has 75 Blast hits to 64 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 17 (source	1.0e-24	59%
RefSeq	Arabidopsis thaliana	NP_187099.6	uncharacterized protein [Arabidopsis thaliana]	2.0e-24	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TPC3

Fln msg: Distance to subject end: 894 aas, your sequence is shorter than subject: 77 - 1100

Fln protein: LTKRSWLEFVEVEREGFFNEVKQAVLGAHALAAQSTAITFLESLVSEFSPSTASAMGLPAEFHEDCRASFELGYLQR

Protein Length: 78

Fln nts: TATTAACGAAGAGAAGCTGGCTTGAATTTGTTGAAGTGGAAAGAGAAGGTTTTTTCAATGAGGTGAAACAAGCTGTTTTAGGTGCTCATGCTCTTGCTGCCCAGAGCACAGCGATTACTTTTCTAGAGTCATTGGTTTCTGAATTTTCACCTTCAACTGCTAGTGCAATGGGGCTTCCTGCAGAGTTCCATGAAGACTGTCGGGCTTCCTTTGAATTGGGTTATTTGCAGCGAT

Fln Alignment:

CL9893Contig1___LTKRSWLEFVEVEREGFFNEVKQAVLGAHALAAQSTAITFLESLVSEFSPSTASAMGLPAEFHEDCRASFELGYL
A9TPC3_______________LLKRGWLESVATEKEAFFSEVRQAVLGAHGPAAQRSGIALLEALVSEFAPSTASAMGLPAEVHEHCRASLELDYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain